BAC Information

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BAC

Clone NameMSMg01-191I11
Chromosome18 (Build37)
Map Location 43,911,563 - 43,911,846
singlet/doubletsinglet
Overlap genenone
Upstream genePpp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3
Downstream geneScgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191I11.T7 (MSMg01no191_i11.b1)MSMg01-191I11.TJ (MSMg01no191_i11.g1)
ACCAG381511AG381512
length725724
length of high quality
(start - end)
321 (46 - 366)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no191_i11.b1 PHD_FILE: MSMg01no191_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:10 2005CHROMAT_FILE: MSMg01no191_i11.g1 PHD_FILE: MSMg01no191_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGGGTACAGCTTCCCTGTCAAAGACACCATCTTGCAGCAGACAT
CTGGTATTCTGGATTCTACAATTCTTCTTTCCCTCTTCCATGGTGTTTTC
TGAATCCTAGATGTAGAGGCTGTGTTGTAAATCAAACAGTTGGCCTTGGT
CACTGTAAGTAAGTTTTCTCTATATTTTGACCAGTTTAGGCTTTCTCTAA
ATGTCTCTATTTGCTGAGAAAATAATATGTGATTAATGAGTATAGCAGAA
TATAAATAGCACCATTTCTTTGACTTTTTTTTTTGCCATGTTTGGCTCTA
TCCTAGGTCTCTTGTTTATCCAGCCTCTCGCTTCCTAGACCTTCAGACAG
TGTTGGTATGGGTCCTCTTAAGACATGGATCTCAAGCTGAACCCCAAATG
TTATCAGAGATGCTTTCCCCAGCAACTGATAGAAACAGATCCAGAGACCC
ACAGCCAAACACTAGGTGGAGCTTGGGGAATCCTGCAGAAGGGGAGAAAG
GATTTTTAGGAGCCAGATAGGTCAAGGACATTATAATAAAACCTACAGAA
TCAACTAACCTGGGCCCACAGGGCCTCACAGAGACTGAACTCCTAACAAG
GGAAACCCCATGGGACTGAACTAGGCCCTCCGCATATATGTTAACGTTGG
ATAGTTTGTTCTTTTCATGGCACTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTTGAAACTAAATTATGAATA
TAAATATGAATTTCTTGCATGCCATACAGAGAGGTATATGCAGAGGGAAC
CAAATTTCAGGCCACAAAGGTAAATTTTAAATGACCAGAACTAAACTCAA
AATCCATTTATTTCTGACATTCTGTAACTTATTAACCTCTTCATGTTAGT
TTTATTGTCTGTAATTAATTCCACTTCACAGACTTGCTGACAGGAGTAAA
TTGAATGTGATACATGCACAAGGTGCTAGACTTGTAGCGTTTGCTTAATT
TATGATATATATTTTTTTCACCACCCCCCCCCATTGTAGTAGTGAGCATT
AAAATAACTGCAGATGACCAGATAGGATTGAACAAAGAGCCCAAAAAGGA
TAGGAGATGGAAATGGTAGAGGCTTGGAGAAGGGTGGCACTCCATCAATG
AGAATGGCACATTCTATAGGGGTAGGCAAGCTATCTTTAGTTTTTATAGG
AAGATATGAGGTGAGAATTTAAACAGTGCACATAGTTACAGAATCCGGAG
CCTAATAAAACCTTGACTATACCAACAGTGCCATAGAGAATATGTGTGCT
TGAAGGTATTCCATTCCCCCGCCTATTGCAGGCATAAAAACACCCTGATC
AGCAATTTATCGAATTGATAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_i11.g1 MSMg01no191_i11.g1 CHROMAT_FILE:
MSMg01no191_i11.g1 PHD_FILE: MSMg01no191_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:10 2005
         (282 letters)



>mm_chr18_43911363_43912046
          Length = 684

 Score =  530 bits (274), Expect = e-155
 Identities = 281/284 (98%), Gaps = 2/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctttgaaactaaattatgaatataaatatgaatttcttgcatgccatacagagaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcctttgaaactaaattatgaatataaatatgaatttcttgcatgccatacagagaggta 425

                                                                       
Query: 61  tatgcagagggaaccaaatttcaggccacaaaggtaaattttaaatgaccagaactaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatgcagagggaaccaaatttcaggccacaaaggtaaattttaaatgaccagaactaaac 365

                                                                       
Query: 121 tcaaaatccatttatttctgacattctgtaacttattaac--ctcttcatgttagtttta 178
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 364 tcaaaatccatttatttctgacattctgtaacttattaacctctcttcatgttagtttta 305

                                                                       
Query: 179 ttgtctgtaattaattccacttcacagacttgctgacaggagtaaattgaatgtgataca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttgtctgtaattaattccacttcacagacttgctgacaggagtaaattgaatgtgataca 245

                                                       
Query: 239 tgcacaaggtgctagacttgtagcgtttgcttaatttatgatat 282
           ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 244 tgcacaaggtgctagacgtgtagcgtttgcttaatttatgatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 684
Length adjustment: 9
Effective length of query: 273
Effective length of database: 675
Effective search space:   184275
Effective search space used:   184275
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)