BAC Information

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BAC

Clone NameMSMg01-191I20
Chromosome18 (Build37)
Map Location 12,090,554 - 12,090,834
singlet/doubletsinglet
Overlap geneCables1
Upstream geneLOC665310, LOC100040148, Rbbp8, LOC621998
Downstream gene6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191I20.T7 (MSMg01no191_i20.b1)MSMg01-191I20.TJ (MSMg01no191_i20.g1)
ACCAG381526AG381527
length720707
length of high quality
(start - end)
312 (46 - 357)281 (78 - 358)
definitionCHROMAT_FILE: MSMg01no191_i20.b1 PHD_FILE: MSMg01no191_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:12 2005CHROMAT_FILE: MSMg01no191_i20.g1 PHD_FILE: MSMg01no191_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATC
CAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGG
GCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGA
TTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTAT
AGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTCTAT
CAGCAGGCGTGGGAGATTTTTCTCTTCTCTGAGTTTCAGTGGTCAGAGCA
GTTTTTGATGCCTCCTAAGCAGGACCCCGATGTGTTATGTTATTTGGTGT
TTGGTCCTCCCCCAGAAAAAAAAAAAAAAGCCCTGGCGGGGTGTTTCCTA
TAAGCTGTGTTGTTTTGCCCAGTAAGGTGCTCATTTGTTTGTTTTTTCCT
ATGCGCTCGTCTTACAAACCACCGCTCTTCTCGCCCTTATTCTATTTCTT
GCTTCTTTTTTTTTAACCCCGTCGTTCCTCTTTATCCCCTTTTTTTTTCC
CCTTATACACACTTCTTCCATCTTATCTTCTCGTTCTTTCCTTTCTCTTT
CCCACTTCTTTTCTTAAGACTCCCCGCCTTATCCCCATTCCTCCTTCGTC
GTCTCTTTCTTAATTTATTA
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGATATATTTCTACAGTTTAT
GGGCAATGCAGGGATACTGACCAAAGGTCAGAATTAGGTAAATGGGAGAA
GAATAATATTATCAGTGACCCATCCAACAGGTGTTCTGCTAAGACGTGGG
TGTCTATAGATAGACATCATTAAGAGTGTTTGTCACTTTTCCTTCTCATG
GCAGAGCAGGATGAGAAAGATGAATAGGATTCATAGGTCCATTCATTCGC
ACAGGGTTAATTGTGTTGACCTTACAACAGTTCTTTCTTACATTTTCTTC
TTAATTGCTTTCATCATTCCCCCCCCCCCCCCAAAAAGCAAGGCAACAAT
GAAAACCATCACAAGCTGCCAGGTGATAAAGAGAAAGACCAGCCCTCTAG
TGAAACTTAAAGATACAGAAGGCAGTGGGCACAGGAAGCCTGGGTTCTGA
CAGGAACCACCTGTCCTCTGTGGCTGCACATTAGCTAATACCCTACAAGA
ACCTGCACGCAGTCAGGCAGCGCTCATGGTCTGTGGTCACCTCCAATGAC
GGCTTTCCTGGTCTGTGGTCACCTTCTATGACGCCTTTGCGGGCTGGACC
ATAGGTAGCAACCTTGTGGCCCTCATACCTGGCCCCAAGGTTTCAAGTTC
ATTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_i20.g1 MSMg01no191_i20.g1 CHROMAT_FILE:
MSMg01no191_i20.g1 PHD_FILE: MSMg01no191_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:12 2005
         (281 letters)



>mm_chr18_12090354_12091034
          Length = 681

 Score =  505 bits (261), Expect = e-147
 Identities = 276/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggatatatttctacagtttatgggcaatgcagggatactgaccaaaggtcagaattag 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 481 taggatatatttctacagtttacgggcaatgcagggatactgaccaaaggtcagaattag 422

                                                                       
Query: 61  gtaaatgggagaagaataatattatcagtgacccatccaacaggtgttctgctaagacgt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 421 gtaaatgggagaagaataatattatcagcgacccatccaacaggtgttctgctaagacgt 362

                                                                       
Query: 121 gggtgtctatagatagacatcattaagagtgtttgtcacttttccttctcatggcagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 361 gggtgtctatagatagacatcattaagagtgtttgtcacttttccttctcatggcagagg 302

                                                                       
Query: 181 aggatgagaaagatgaataggattcataggtccattcattcgcacagggttaattgtgtt 240
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggatgagaaagacgaaaaggattcataggtccattcattcgcacagggttaattgtgtt 242

                                                    
Query: 241 gaccttacaacagttctttcttacattttcttcttaattgc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaccttacaacagttctttcttacattttcttcttaattgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)