BAC Information

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BAC

Clone NameMSMg01-191K21
Chromosome18 (Build37)
Map Location 62,041,602 - 62,041,880
singlet/doubletsinglet
Overlap geneAblim3
Upstream geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738
Downstream geneSh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191K21.T7 (MSMg01no191_k21.b1)MSMg01-191K21.TJ (MSMg01no191_k21.g1)
ACCAG381610AG381611
length733719
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_k21.b1 PHD_FILE: MSMg01no191_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:23 2005CHROMAT_FILE: MSMg01no191_k21.g1 PHD_FILE: MSMg01no191_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCCCA
CTTATGTTGGATGCTCAGAAAGCTTCCTAAGAGAGGGCAAAACCAGGAGC
CTCACTTTCTAAGTATCTAGGCAGCAGCCAGCTCACCAGAGCGCTTCATA
GCTGAACTTAGTTTCAAACAGACATCGTTTGTACACTGTCACTGTTGGGG
ACAGGTAGCAGTGTCATCTCTCTGAGGCATTAAGCATTAACCCAAAGTTG
GAGCAAATGAGCCAAGAGTAGAAAATCCAATAAAATCACTGATTCAAGAA
TGTTCAAGTCACTGATCATATGTATAGCCACTTATAAACGAATTTATGGT
TAATTTAGATAATTGCCCATGCGNCCCCCCCCTGANAGAGAAAGGCATTT
TGTAGGATGTTCAAAGACACAAAAAAAAAAAAAATTATGAACCAAATTAG
AGGAGGGTGTGGAACACAGTAGATCAAAAGGGAAGTATATAGGCTGGGGG
GAAAGAAAGATGGTGAAAGTTGGGGGAGAGGTGGGAAGTGAGGGGGCGGG
GAGGAGTGGTGTGCAGGGGGGGGGGGTCGGGGCCGGGAGAGGGGGGGCGG
GGGGGGGGTCCCGGAGAGGCGGGGTTTGCGGGGGGTGGGAGAGGGGTGTC
GTTTGGAGGGAGGGGTGAGGGCTGTGGGTGGGCGGTGGGTGGAGGGCGGG
GGGGGGGGGGGGGGAGTAGGGGGGGGGGGGGCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTAATAACAACCAGGACAGGAT
ATATCAGCATTCCAAAGGGAGGGAGTGGGGAGGGAACTTAGAAACCTCTG
GGTATTTCTAGAAAATTAGATGTTTTCCAGAGTCCCTCCACTCTAATGAG
AAAACCATTGAGTCCTAGGGCTCAGCTTGCTAGCTGATATCCCCAGGACT
TCTCTACAGTGTATGGGAGCTTGATGGCTTGCCAGGGTCTCAGGAAGCAA
ATGTTGTATAACTCCTGAAGCCTCTGGTTCGGGGACCAGGGGACTGAGTC
ACTCAAAGTTTGAGTCATTCTGAAACTTNNCAAGGGCGTCCATTTTCCAA
CATGGTTCCCAGAGCCCTAGACAAAAACAAAATTCTCAGATTGGCTGGGG
GGCAAAGAGGCTGCCAGGCTGGACTGAGGTAGCCACGCTCTCCTGTTGGC
AATGCCCAGGCAGGACTGAGGTCCTGAAGACTCAGCAGGAAGGAAAGCAG
TTGTCTTTCTTTTCGGGATGCCCTGAACAAAAGATATTGTTGAGAGAGGA
TAGAAGAGAAGAATGGGCCCCTCCTGAATAGATTGATGCCTAGCACACTC
AGCTCCAGCCCTTAGCTAGACGGTGACTTCATCAACAATCCTCCCCTCTG
GGCCTTGGAATCCCTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_k21.g1 MSMg01no191_k21.g1 CHROMAT_FILE:
MSMg01no191_k21.g1 PHD_FILE: MSMg01no191_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:23 2005
         (283 letters)



>mm_chr18_62041402_62042084
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttaataacaaccaggacaggatatatcagcattccaaagggagggagtggggagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 479 ccttaataacaaccaggacaggatatatcagcattccaaagggagggggtggggagggaa 420

                                                                       
Query: 61  cttagaaacctctgggtatttctagaaaattagatgttttccagagtccctccactctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cttagaaacctctgggtatttctagaaaattagatgttttccagagtccctccactctaa 360

                                                                       
Query: 121 tgagaaaaccattgagtcctagggctcagcttgctagctgatatccccaggacttctcta 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgagaaaaccgttgagtcctagggctcagcttgctagctgatatccccaggacttctcta 300

                                                                       
Query: 181 cagtgtatgggagcttgatggcttgccagggtctcaggaagcaaatgttgtataactcct 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 299 cagtgtatgggagcttgatggcttgccagggtctcaggaagcaaacgttgtataactcct 240

                                                  
Query: 241 gaagcctctggttcggggaccaggggactgagtcactca 279
           ||||||||||| |||||||||||||||||||||||||||
Sbjct: 239 gaagcctctggctcggggaccaggggactgagtcactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)