BAC Information

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BAC

Clone NameMSMg01-192C08
Chromosome18 (Build37)
Map Location 17,526,934 - 17,527,340
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192C08.T7 (MSMg01no192_c08.b1)MSMg01-192C08.TJ (MSMg01no192_c08.g1)
ACCAG381920AG381921
length1,2751,262
length of high quality
(start - end)
411 (44 - 454)384 (72 - 455)
definitionCHROMAT_FILE: MSMg01no192_c08.b1 PHD_FILE: MSMg01no192_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:08 2005CHROMAT_FILE: MSMg01no192_c08.g1 PHD_FILE: MSMg01no192_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGGCAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTAGTTACGTTGTCAGGGTTTCTAAGAAAACATTTACAGAAGATTT
TTAGTGAATGAGATTATATGTGGTTTCTGATTAGCCCTGTACATTATTGA
GGACTGACTAAATAACTGCATCAAGGTAAAAGTGAGACTCTTTACAACAA
AGTCATAAGATTATGAGCATGTTTTGATTATAAAAGGTTTCCAATATCAT
TTGTAAGATTCTTGGAATATTACAGTTGTATAGCTTGGAAAAGAGTAAAG
TAGAGGGCAAAGGTCATATAATCTATGTCCCACTACTCTGGTGACTTCTT
TATGTGATATATTTCCAGGGAAAGAGAATATTGTTTATATTCAGGCAGCC
TTCAGAAGGAATTTTGTTGGCTGTATTTGAACTCTTAATTCTAAGTCTGA
GAGTTCTGTTTCCCGCCCCCTTGTGTCATTTTATTTCTCTTCACATTCTC
TGTTGCCTGACAAGGGTTTAAAGTTTGGAGGCTGAGATTTGGAACCATTT
CCTGGACATTCACTTCCTATTTATAATCTTTATTTATGCTCCTTTATGTT
GTATGTCTGTCTGTATGTTTCACACATTTTCTTACAATTTCTCTCTTCAA
TCTGTATTGCTGAGATTTCCACAAAGGTTTATAAATGCAAGAAAGTTATT
AAGTAAAATGAACAAATTTGGTGATATTACTTTTATTAGTAGGGTAAACT
AGTGTGTTTACTACTAAATATTGATGGAATAAGAAATGATTTCAAATGTA
GGTAAGGATCTTTATAGAAAGCTCTTACCTTCGTGTTAAATCAGAAATTC
CCACAATACGTTATTTCCTACATCTTTTATCAAAATATTATTTTAAATGG
AGTTAATAATTTTGGAAAGTCGAAAAACTTTTACTTTGGAAAATAAAGGG
GAGGAAAAATTTTATCAATGAAACCCTATCTTTATTTTAAAAATCCGGTG
GACTTGTATAACCCTTTTAAAAAACTTTTTACCTTTGGGAGGGTGGCTGT
TCCCTATTTATAACCTATTTTTCCTAACGTGGGGGGGTGATTCTTCCCCC
CCCAAAAACTCTTTTTTTTATAAAAAAAAAAAAACTCTTATTCCGACCCA
ATGAAGTTCCCTTTATCTTCCAATTCCTTTATTCTTACTTATAAAGGTGT
TTTCTCGCCTTCCTCTCTCTCTCTTAATAAATATACATAATGTATACAAT
ACCATCTTATTTAATCGTCNCTGTA
NNNCCCTACAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAACTCTTCCAAGAATTAAGAGAAATGA
AACACACTAATTGTGGGAAGCCATTCTGGACTCCCTGACCAGCCGGACAG
AAATCTGTGCCAGGCAGTAAACAAGCCCATATTTGGTGGATGGCTAGCCC
TTAATCCCTGATTGGCTGAGCAATCCTGCCTGGTGAGGTGATGTGACCTG
TGGTGATTGGTTGAGGCGTGGTTGTGGCTTGAGTGGATAAAAATGCTTGT
ACCCCGAGAGGCAGGGGATTTGAAGAGAGAAGCTGCCTGAGTAAACTGCT
TTAAGGAGAACGGGTGGTTGCGTTTTCCTTGCTGGTCGAGTTGGACGCAA
CAACTAATATCAATGATAATCATTTTACCATGTACAAAATACAGGAAGTT
ATTTTTTTTTCCCCCCCTATATTCCTTTCTGTTCACCAACTAAAAGAAGG
GCACTCTTCTCATCCTCAGACTGATGAGAAGACTGATAACAACTGTATTT
CCATGAAATCCACATGAATAGACTTTTAATAAGAGGAGATCATCAGGTAT
CTAACTAATTTTATTTAACATAATGTCATTCAGCTTTGTCTGCATTGTCA
AACAAAGAGGACTTCAGCATCTCTGTGTTCCAACATACTCTCTGCATGGG
TGCTTATCTCATTTTCACTTATCCATCATGAATACTTCTGCAATAAACAT
AGAAGGGCAAATATCTTTTCAATATGATCTCATTCCCTTTGAGTACATAC
CCATGAGTAGGATTGCTAGATATCAATCATGGTATTTCTATTTGTAATTT
TCTGAGGAGGTGCAATTTTGTTTCAATAAGAGCCATTTACTTTATCGCAA
AAATTGAAAGTGTTCTCTTTGTTTATACCCTGGAACAAAAAATTTTTTGT
TCTTGGAAAAACAATTCTCCTCGGAAGGAGGAAAAACCCCCCTTTGGGAT
TTTTTTTTTTTTTCCCCGCCGGTAAAAAATGTGGGAGTATATTCTATATT
TCCCTGGGTGTGTTTTATTTAGAAAAACAATACGTTGGTTTTGCTCTTCC
TTTTTCAATTTAAATTTTTCTTCCTTTAGAATATATCCCTCTTTTATTGT
TCCAATTACCTTCTTAATCCCCTCTCCAAAATCTTTACTGTCTGAATTCT
TTTCTTTATGTCTAATTCCCCTCCGATATATTCTTCTGGCTCTCCTTACT
TTCTTCATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_c08.b1 MSMg01no192_c08.b1 CHROMAT_FILE:
MSMg01no192_c08.b1 PHD_FILE: MSMg01no192_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:08 2005
         (411 letters)



>mm_chr18_17526730_17527540
          Length = 811

 Score =  733 bits (379), Expect = 0.0
 Identities = 400/407 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtagttacgttgtcagggtttctaagaaaacatttacagaagatttttagtga 64
           |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcagttacgttgtgagggtttctaagaaaacatttacagaagatttttagtga 264

                                                                       
Query: 65  atgagattatatgtggtttctgattagccctgtacattattgaggactgactaaataact 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgagattatatgtgttttctgattagccctgtacattattgaggactgactaaataact 324

                                                                       
Query: 125 gcatcaaggtaaaagtgagactctttacaacaaagtcataagattatgagcatgttttga 184
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 gcatcaaggtaaaagtgagactctttactacaaagtcataagattatgagcatgttttga 384

                                                                       
Query: 185 ttataaaaggtttccaatatcatttgtaagattcttggaatattacagttgtatagcttg 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 385 ttataaaaggtttccaatatcatttgtaagattcttggaatgttacagttgtacagcttg 444

                                                                       
Query: 245 gaaaagagtaaagtagagggcaaaggtcatataatctatgtcccactactctggtgactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaaagagtaaagtagagggcaaaggtcatataatctatgtcccactactctggtgactt 504

                                                                       
Query: 305 ctttatgtgatatatttccagggaaagagaatattgtttatattcaggcagccttcagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttatgtgatatatttccagggaaagagaatattgtttatattcaggcagccttcagaa 564

                                                          
Query: 365 ggaattttgttggctgtatttgaactcttaattctaagtctgagagt 411
           |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaattgtgttggctgtatttgaactcttaattctaagtctgagagt 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)