BAC Information

Click to search

BAC

Clone NameMSMg01-193N06
Chromosome18 (Build37)
Map Location 51,475,785 - 51,476,187
singlet/doubletsinglet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193N06.T7 (MSMg01no193_n06.b1)MSMg01-193N06.TJ (MSMg01no193_n06.g1)
ACCAG382975AG382976
length7541,042
length of high quality
(start - end)		563 (35 - 597)---
definitionCHROMAT_FILE: MSMg01no193_n06.b1 PHD_FILE: MSMg01no193_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:29 2005CHROMAT_FILE: MSMg01no193_n06.g1 PHD_FILE: MSMg01no193_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTCTCCCCAACCCCTGTATTCATGTATATTCGAGCATTTGTATCT
ACAAACATATCACATGTGTAGGTCATTGTATGACAGTCAGAAGATAATTG
GAAGGAATCTGGTTTTGTTTTTTTTTTCAATGCTGTGGATCCTTAGGACA
TCTAATTCCAGTCCTCAAGCTTGAAAGAATGTGATGTGATGGTTTGTTTT
GTTGGTTTGATGTAATTTAGAATAATCTGTGGAAATAAGGGAGAAACTGT
GTGCAACTGATTACCCTGTGACATATATGTTGGGTATTATCTTGAGTTTG
GTAATTGTGGTGCAAAGACCTACCCTCTGTGGCTAGTGCAATTCTAAGAG
CAGGAAATGCATCATAAAAACACATTATTTACACATATAAAAGGACCAAA
AAATAATGTTTTCTAAATGTAGAAAGTAAACTGACCAAGAACATACATGC
ATGTATAAATAAATTTATAGTTCCCTGCTCAGACAATAGATGTAACATGA
TGAGCTATCCCAAATTCCTGTCAGGATGACAACTCAACTCTGATGGAATC
TAACCTAGAACTGTGAATTATCTTATTCTTTTATCTCCTACTCTGATTTT
GTCCGTTTATTTTCCTCTGCTACACATTATGAAGCTTGTATCCCTCTTTG
CCAGACTTACAATACCTTTTCTAACTTATTTAACCAGATCTTCTCCCACC
CCGG

TTATAATTAATATTTGTTCNCTCGGTGGGGGTGGGGGGTTGNCNNTTTGG
GGGGGAAGTTGGGGGGTGGGGGGGGAGGAGGGGGTTTCAAAAAGGGGGGG
GNGGGNNGGGGGGGTTTTCAAGAAAAGGGGGGGGNNNNNNGAGGGGGGNG
GGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTCCCTAAAAAAGAGGGTGG
GGGGGGGGTGGTGGGGGGGTTGTGTAGATTGTTGAAATGTAATGTAGGGT
GTGGTGGGTGGGGGGTAGGTGTGGGGAGGGAGGGGGGGGGGGAGGGTGGG
GGGGGGGGGTGGGGGGGGGGGGGGGGTGGGGGGGTGGGGGGGGGGGGGTA
GGGGGTAGTATTATAGGTGGTGAGGTGGAGGTAGGTGGGGTAAGAGTGTT
TGGGTGGTGTGGGGGGGGTGGGAGAGGGAGGGTTGTTTTTGTTGTGGGTG
GGGGGGGGTGTAGGGGGGGGGTGGGGCGAGGGATTTGTTTTGTTTTTGTG
GCGGGGCTGTGGTTGGGTTATTGGGGGGTTGTGTGGGGGGTGTGGGGGGG
TGTGGGTGGGGCAAACGGGGGGGAGAAGAAAAGAAAGAGAAAGGAGGGGG
GGGGGGGGGGGGGGTGGGGTGAGTGGGGAAGGTGTGTGAGGGTGTGGGAG
GGGGGGGGTGGGAGGAGGGGTGGGGGGGGGTGGTATGAGTGTGGAGTGGG
GGGGTTGGCGGGGGAGGGGGGGTAGGGGGGGGGGGTGTGTGTAGTGAGGT
TTGGGGGGGAGGGGGGTGTGGGGGATAGGTGTGGTGAGGGTGAGGGGGGT
AGGTGTGGGGATTGTTAGAGTTGGAGTGGTGTGGGTGGGGGAGGGTGGGA
GGGGGGGGGGTGGTTGGGGTGGGGGGGGAGAGGGGGTAGGGGTGGGTGGG
GTGGGAGGGGGTGGGGGGCGGGGAGGGAGGGGAGGGGAGGGTGAGTTGGA
TGGTGGAGGGAGGGTGGTATGGGGTGGGGTGGGTGGAGTGGGGGGGTGTG
GTGGTGTAGAGGGGGAGTTATGTTAGTGGTAATTGAGGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_n06.b1 MSMg01no193_n06.b1 CHROMAT_FILE:
MSMg01no193_n06.b1 PHD_FILE: MSMg01no193_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:29 2005
         (563 letters)



>mm_chr18_51475225_51476187
          Length = 963

 Score =  654 bits (338), Expect = 0.0
 Identities = 383/404 (94%), Gaps = 11/404 (2%)
 Strand = Plus / Minus

                                                                       
Query: 170 aattccagtcctcaagcttgaaagaatg----------tgatgtgatggtttgttttgtt 219
           ||||| |||||||||||||||||||| |          ||||||||||||||||||||||
Sbjct: 963 aattcaagtcctcaagcttgaaagaa-gcatctttacctgatgtgatggtttgttttgtt 905

                                                                       
Query: 220 ggtttgatgtaatttagaataatctgtggaaataagggagaaactgtgtgcaactgatta 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggtttgatgtaatttagaataatctgtggaaataagggagaaactgtgtgcaactgatta 845

                                                                       
Query: 280 ccctgtgacatatatgttgggtattatcttgagtttggtaattgtggtgcaaagacctac 339
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 844 ccctgtgacatatatgttgggtattatcttgagtttgctaattgtggtgcaaagacctac 785

                                                                       
Query: 340 cctctgtggctagtgcaattctaagagcaggaaatgcatcataaaaacacattatttaca 399
           ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 784 cctctgtggctagtgcaattctaagagcaggaaatgcatcatacaaacacatcatttaca 725

                                                                       
Query: 400 catataaaaggaccaaaaaataatgttttctaaatgtagaaagtaaactgaccaagaaca 459
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 724 catataaaaggaccaaaaaataatgttttctaaatgtagaaagtaaactgaccaagcaca 665

                                                                       
Query: 460 tacatgcatgtataaataaatttatagttccctgctcagacaatagatgtaacatgatga 519
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 664 tacatgcatgtataaataaatttttagttccctgctcagacaatagatgtaacatgatga 605

                                                       
Query: 520 gctatcccaaattcctgtcaggatgacaactcaactctgatgga 563
           ||||||| ||  ||||| ||||||||||||||||||||||||||
Sbjct: 604 gctatcctaagctcctgccaggatgacaactcaactctgatgga 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |