BAC Information

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BAC

Clone NameMSMg01-195D04
Chromosome18 (Build37)
Map Location 85,833,767 - 85,834,084
singlet/doubletsinglet
Overlap genenone
Upstream geneCndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195D04.T7 (MSMg01no195_d04.b1)MSMg01-195D04.TJ (MSMg01no195_d04.g1)
ACCAG383811AG383812
length749728
length of high quality
(start - end)
---319 (84 - 402)
definitionCHROMAT_FILE: MSMg01no195_d04.b1 PHD_FILE: MSMg01no195_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:20 2005CHROMAT_FILE: MSMg01no195_d04.g1 PHD_FILE: MSMg01no195_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGGCTATATTTGCGGCGCCAAANNGAGGCCANATTCCGACCCGCNC
GGNNNCNCNGNGNTTCCAAAAAAAGCCGGGNGGNGCNGNGCCNGCNNGGG
GAGCNNGCNGCCCGCNTTTGCCCCCNNGCGNCGGGGGGGGCGGGGNGGGN
GNNGGGCGCNGCCCCCCCCGGGCAGGCCNCCGCNNNCCGGGANCGCGCGG
CCGNCCGGCCGCGGGGGGCCCGGGGCCGGNCCGCCCCGGCCGGGCNCGGG
CCCTGTTTTTGTTTCCGGCCCCGTTGACCGGCCGGTTTTTTTTACTTTCT
TGCCGTTGACGACCCGACCATTTGGTGCGTTTAGANGAGAGCANGACGGA
AAACAAAGAGTAGAGGGCCGCCGCCACGGGAGAGAGGGGGGAGGGGAGGG
GGGAGGGGGGGCCAGAAGCCGCCGGGGGAGGAGAGGGGAGAGCCCCAGCC
GCGCAGGGCGGACCAAGGCCCGCCGACGGAGCCCGGGGGACGCGACAGGG
CCGGCCGAGGAGGACCGAGGGCCAAGGCGCGCGAGGGGCAGGGGCGGAGA
CAGCGCGGAGGAGGGCAGGAAAGCCAAGAAGAAGGCGGGGGGCGAGACGC
GGGGGCAAAGGGAGGGGGCGGGCCGGGAGAACGGGAGACGGACGGACCCC
CAAAACGGGGAAGAAGGGCAGGGCGAACGGTTTTTTTTTTTCTGTGAGAA
GAGGAGCTTGGTAACGCGCTTGGAGGTCGATCGAGGTATATGGACCGGN
CTTTTTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCCCTTATTAAGGC
AGGGGTTCCTCAGTCCCTTTCCCTGAGCATATTGACTTTAGGAAACATAG
GATGATGATGGCACTTTGGAGATCCCTTTGCAGTTTTTACTGCAAGACTG
TCTTTTTCAATCCCTAGGAGCCATGTCTTTGAAATGGAGTTAAGGAAGAT
AATGTTCCATCTCTTCATCATATGAAAGATAAGGAACACTTCCTCTTACT
TCTTGCTATGAAAATATCTCTATCTGCAGATACCATGAAGTCGTCTTCTT
CTCTTTGTGAGACGGTCAGTAAGTAAGTTGATGTATAGTGACATCATCCA
GACTTAGGTTGAGTCCAAGAAGAATCTTGGTCTCCTTTTGCCTTTGTGGT
AACCTGTGACACTGTTTTCAGTCTCCGTTCATAGAAGTTCACAATTCTAT
TGTGTTAACATTTCATTATTGCATATTCATTATGTATAGCAATGTGTCTC
ACATGACAATTTTCTTACATATCACAAGTTTAGACTGCGCTCACTTCTCA
TTAGATTGTCCCCTCATCACTTTCTTTAGTGTCCTTCCGCTTCTAAAATA
GTGTGTGCGTGTGCATGCATGTGATTGTGTGTGCGCATGTGTGATCGGGT
GCTATGACTGTTTGCAAACATTTGTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_d04.g1 MSMg01no195_d04.g1 CHROMAT_FILE:
MSMg01no195_d04.g1 PHD_FILE: MSMg01no195_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:20 2005
         (319 letters)



>mm_chr18_85833567_85834284
          Length = 718

 Score =  578 bits (299), Expect = e-169
 Identities = 314/319 (98%), Gaps = 1/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcccttattaaggcaggggttcctcagtccctttccctgagcatattgactttagga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcccttattaaggcagaggttcctcagtccctttccctgagcatattgactttagga 260

                                                                       
Query: 61  aacataggatgatgatggcactttggagatccctttgcagtttttactgcaagactgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacataggatgatgatggcactttggagatccctttgcagtttttactgcaagactgtct 320

                                                                       
Query: 121 ttttcaatccctaggagccatgtctttgaaatggagttaaggaagataatgttccatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcaatccctaggagccatgtctttgaaatggagttaaggaagataatgttccatctc 380

                                                                       
Query: 181 ttcatcatatgaaagataaggaacacttcctcttacttcttgctatgaaaatatctctat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ttcatcatatgaaagataaggaacacttcctcttacttcttgctatgaaaatat-tctat 439

                                                                       
Query: 241 ctgcagataccatgaagtcgtcttcttctctttgtgagacggtcagtaagtaagttgatg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgcagataccaggaagtcgtcttcttctctttgtgagacggtcagtaagtaagttgatg 499

                              
Query: 301 tatagtgacatcatccaga 319
           || |||||| |||||||||
Sbjct: 500 taaagtgacttcatccaga 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space:   219790
Effective search space used:   219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)