Query= MSMg01no195_d21.b1 MSMg01no195_d21.b1 CHROMAT_FILE:
MSMg01no195_d21.b1 PHD_FILE: MSMg01no195_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:24 2005
(617 letters)
>mm_chr18_84680878_84681895
Length = 1018
Score = 694 bits (359), Expect = 0.0
Identities = 380/387 (98%), Gaps = 1/387 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgaattatttcctcattgtggatatgagtatcatatagacatattttgagcca 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaattcttgaattaagtgatcattgtggatatgagtatcatatagacatattttgagcca 328
Query: 65 gttactgcatactgttaactatcctttacatcttcaagattgga-ttttttcccccctca 123
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 327 gttactgcatactgttaactatcctttacatcttcaagattggatttttttcccccctca 268
Query: 124 gagtctcactttgctcactttgctgtatctacttctacatccttgcaccgctgtctgggt 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 267 gagtctcactttgctcactttgctgtacctacttctacatccttgcaccgctgtctgggt 208
Query: 184 cttgtggtttgaataagaatgcctctcataggttcatatatttgaatgcttagtcatttg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cttgtggtttgaataagaatgcctctcataggttcatatatttgaatgcttagtcatttg 148
Query: 244 ggagtggcaacatttgaaaaggattagaaggtgtggtcttgttggagtgtttcactgggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ggagtggcaacatttgaaaaggattagaaggtgtggtcttgttggagtgtttcactgggg 88
Query: 304 tgtgatttaaggtttcaaaagctcatgccaggaccagtgcctctccctgctgtccgtggg 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 87 tgtgatttaaggtttcaaaagctcatgccaggaccagtgcctctccctgatgtccgtggg 28
Query: 364 tatagaactcttagctacttctttagc 390
|||||||||||||||||||||||||||
Sbjct: 27 tatagaactcttagctacttctttagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_d21.g1 MSMg01no195_d21.g1 CHROMAT_FILE:
MSMg01no195_d21.g1 PHD_FILE: MSMg01no195_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:24 2005
(639 letters)
>mm_chr18_84532013_84533050
Length = 1038
Score = 1143 bits (591), Expect = 0.0
Identities = 632/657 (96%), Gaps = 19/657 (2%)
Strand = Plus / Plus
Query: 1 aatgtagctttatccttttcaggtgctaatcatccaacagattacatacacatgaagtgc 60
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 183 aatgtagctttatccttctcaggtgctaatcatcaaacagattacatacacatgaagtgc 242
Query: 61 acacaggtaattcctgggagcaaacctaaagggctgacctctccaggaaaagactgggcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 243 acacaggtaattcctgggagcaaacctaaagggctgacctctccaggaaaaggctgggcc 302
Query: 121 agtttatccatctggttaggtaatgagcaagcttctatacaccgcagactttgagcaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agtttatccatctggttaggtaatgagcaagcttctatacaccgcagactttgagcaaag 362
Query: 181 accaccgtcccttagctccatcacacagtatattatgaagtgtgctcagagctgtttgct 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 363 accaccgtcccttagctccatcacactgtatattatgaagtgtgctcagagctgtttgct 422
Query: 241 ggatctcctgtatttcaatgaaaaaaatgtttcatgacgacacgttgttgttgttgtt-- 298
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 423 ggatctcctgtatttcaatgaaaaaaacgtttcatgacgacacgttgttgttgttgttgt 482
Query: 299 ----------------aagatagagcctcactgtgttacacagataactttaaatttagg 342
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 483 tgttgttgttgttgttaagatagagcctcagtgtgttacacagataactttaaatttagg 542
Query: 343 attctttggtcccagcctgtagactacttggattaaggcattaacaaccaagcctagcgt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 attctttggtcccagcctgtagactacttggattaaggcattaacaaccaagcctagcgt 602
Query: 403 gacagcactattttaacatagcaagcaatcccattagagaagacagattctaccaatatg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gacagcactattttaacatagcaagcaatcccattagagaagacagattctaccaatatg 662
Query: 463 acgaaaaacagacatacataggagaaaagcatacaatttcaaaacaatcaactacaaaaa 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acgaaaaacagacatacataggagaaaagcatacaatttcaaaacaatcaactacaaaa- 721
Query: 523 tcaaatccaggaatatcattttctttaaaaatgtagtatttaaatcagatacctattagt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tcaaatccaggaatatcattttctttaaaaatgtagtatttaaatcagatacctattagt 781
Query: 583 aaactgtcaacaaaactgtccctacaaaataccatattcaagttcatttcaccctgt 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aaactgtcaacaaaactgtccctacaaaataccatattcaagttcatttcaccctgt 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space: 646612
Effective search space used: 646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
