Query= MSMg01no196_a21.b1 MSMg01no196_a21.b1 CHROMAT_FILE:
MSMg01no196_a21.b1 PHD_FILE: MSMg01no196_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:28 2005
(379 letters)
>mm_chr18_36613047_36613825
Length = 779
Score = 627 bits (324), Expect = 0.0
Identities = 359/384 (93%), Gaps = 22/384 (5%)
Strand = Plus / Plus
Query: 5 gaattctagggccctctctaattataactaactctccacaaggaaagcacagtcagggtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagggccctctctaattataactaactctccacaaggaaagcacagtcagggtt 264
Query: 65 ctcagactgttaagtaccaaaaattgtttccaaataacaacccatttataaactggcttt 124
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcagactgttaagtagcaaaaaatgtttccaaataacaacccatttataaactggcttt 324
Query: 125 tgactcaagattgtaattcccagaactcaagaggctgaggcagaaggattgcctggagtt 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 tgactcaagattgtaattcccagaactcaagaggctgaggcagaaagattgcctggagtt 384
Query: 185 caaggccagcctggctacatagtaagtctctagaacacactgagtgagacactgtcacaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaggccagcctggctacatagtaagtctctagaacacactgagtgagacactgtcacaa 444
Query: 245 aaaaaaaaaaaaaaaaaa-----------------catttctaagcaatgaattgaattg 287
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccatttctaagcaatgaattgaa--- 501
Query: 288 aacaaaataacaataaccatactaatccaattcctctgaaaggtcttttggaaagcttac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 --caaaataacaataaccatactaatccaattcctctgaaaggtcttttggaaagcttac 559
Query: 348 gtggggagcaggggtggtgtgtga 371
||||||||||||||||||||||||
Sbjct: 560 gtggggagcaggggtggtgtgtga 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_a21.g1 MSMg01no196_a21.g1 CHROMAT_FILE:
MSMg01no196_a21.g1 PHD_FILE: MSMg01no196_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:28 2005
(297 letters)
>mm_chr18_36723381_36724078
Length = 698
Score = 561 bits (290), Expect = e-164
Identities = 296/298 (99%), Gaps = 1/298 (0%)
Strand = Plus / Minus
Query: 1 atagtagagagaactgacttccacaagttgttctatgacatccaaaagaatgctactaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atagtagagagaactgacttccacaagttgttctatgacatccaaaagaatgctactaca 483
Query: 61 cacaccttaattataaataaaactgagaaaaaaa-ttactaataaaaatttactatgtaa 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 482 cacaccttaattataaataaaactgagaaaaaaatttactaataaaaatttactatgtaa 423
Query: 120 caactaattcattgtctggctctaaaataatttagaaaatatgaaatgaggattttatta 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caactaattcattgtctggctctaaaataatttagaaaatatgaaatgaggattttatta 363
Query: 180 ttattctaatacttcacaggtaagtattttcacaggtaagaacattatttgttatccctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttattctaatacttcacaggtaagtattttcacaggtaagaacattatttgttatccctt 303
Query: 240 ccaaagtaaaatgaaaagacagttcataaaaaagaaaacagaaaggtaaataacttaa 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccaaagtaaaaggaaaagacagttcataaaaaagaaaacagaaaggtaaataacttaa 245
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 698
Length adjustment: 9
Effective length of query: 288
Effective length of database: 689
Effective search space: 198432
Effective search space used: 198432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
