BAC Information

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BAC

Clone NameMSMg01-196O06
Chromosome18 (Build37)
Map Location 11,290,295 - 11,290,947
singlet/doubletsinglet
Overlap genenone
Upstream geneAK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
Downstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196O06.T7 (MSMg01no196_o06.b1)MSMg01-196O06.TJ (MSMg01no196_o06.g1)
ACCAG384828AG384829
length7321,368
length of high quality
(start - end)		657 (46 - 702)---
definitionCHROMAT_FILE: MSMg01no196_o06.b1 PHD_FILE: MSMg01no196_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:35 2005CHROMAT_FILE: MSMg01no196_o06.g1 PHD_FILE: MSMg01no196_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGGTCTGTGGGTCTATGAGTTAATGGGTCTATGATGGTAATTC
TGTAACAAAATTACATCCTTGCTCCGAGACTGGAATCTCTTACAGAGATG
TGCTTTTAATGCTAATGTTCTTAAGGGCTGGGGTTATTCAGGTCATGAGT
GATGATCTTACTCATATCTCTTAAGAGGGAGTAAATATGTGTCAGAAGAG
CTGGTAATTTACTGAAGACCCTGGGACTTGGTTGCAAGCATAAGAAAGAT
CTCTCACTCTCAGTTCCTTGAGAGTAATATGGAGAGTGTGTAAGATTAGT
CACACACCCCCATACTGTAAGTTCTAGAAGAAAGTTCTACTTCGTTGAGT
AGATAAATATTTGCTTAAGCCAAATCATTAGCCTTGTCTTACATAAAAGT
TTCTGACTGGCTTTACATACACCATGAAGGAATTATAAAAGGAATGGTCT
ATTTCCTCAGGTAAGGAGTGAGGCATGGTATTCCTTGAGGCCCCTGAACC
CCAACCAAGAGAGACATTGCTCTCTAGAGGAGGTCAGCTCATGCAGGTCT
CAAGGGAAAAGTGAGATAACGGGGTAGTTGTGCTAGAGACAAAGATGGAA
GACTGTGGAGCCTTGTTCTCTTCTTAACAAGAGTCCTGCACACTGGAAAA
GGAATCGGGGCACCTATAGGCAGAGAATTCTN

CCCCCCTTCTTCCCCTATTTTCTTCTTTTATATTCTTCCGAANGGGAGGA
ACGGGTGGAGAGACCTNTGAGGGAAGAGTAATCTGAGTAAGGAACAGAGA
GAAAGGCAGTGTTATACAAAAAAAAAGGGGGGTGNATAAGAAGGAGAANT
TATCTCCCAGAAAATAGGAGGTGTTATTGGTAATATATTGACGAGTATAT
AACTTGTTAATGNAGAAGCTATTATACTTTTTGCCCCACGTATAAATAGT
TAATTATTATAATAAATATAGTATCGAAGAGAGTATTAAATAGCATCAAG
TGTATGATTTATTTCGGCGTGAGACGTAATAATTTATTGTATAATGCAGT
AGAATAGATACAAATATTTAAAATTTATTTGTACAGGAGAGAGAGATATA
ATTATAGCTTTCCATTTAATTAGGCTTGTACTCACATTTATTTGTATACA
TATCTTGTAAGAACAGTGTGTTGTGCTATGTTATTATGTGAGAAGAATCT
ATTTTACTAATGCATAAAGTAATATCTAATGTATTATTTGAATTATTGCG
TATGATTATGTAGCCGTAATACTATACGGTAGAGTAGGTCTATATGCAAT
ATTATTGATACAAAATGACTCCATTATAGCAATAGTTTTCCAGTAGATAT
CAGTAATGTAAATAATATGATTGTAATGGAGAATTAGCCTTACACCANCT
GGAGAGAATTATTAAATAAAATTTTTCAACCTGTTTTATTATAGTTTGTG
ACAGGTGGAATAGGAAATAGTANCGTGATGCAAGTATTAGCTCTTTTGAC
CAGTGTAGTTGGCTAATATGAGTTTTATATACGCGTCGATATGAGGTTGT
GTTTGTCTTTGAATATATAGATTATAGCACTGTATATAATGTACACGGAA
AAGATGAGTATGATATATTATAGAAATGATAATAGATTCTGATATATGGT
GACGCCCTCTTGTCGGGGTCGGTCTATTGATTTATGNTNTGTGGATGTAG
TCGCGTCTTATGAATTAATATAATATCATCAGTAATTGTCCAATCACATA
ATTGCATATGCGTGTAGCNGAGAGAGAGAGGTATTATGTTGTATAGAGAG
CGTGTACGCATTTCGGCTGATGAGATAGTTCGATATCGAGGATCATAGAC
AATATGATGATTTGTGTNATGGCATAACTNACGATAGCTTGTGTATATAG
AGATGTGCTATTTATGTAGTATTCGAGATACTTNATGTTGATATATAAGA
ATGTTATACGCACGTGCGCAACGAACCAATGTGCATGACCGCTGTATTTA
GTGATTACGCGTGTATATTGCATATATATACTTGCCGTTGATGTTATGTG
ACGCACTGTGACTATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_o06.b1 MSMg01no196_o06.b1 CHROMAT_FILE:
MSMg01no196_o06.b1 PHD_FILE: MSMg01no196_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:35 2005
         (657 letters)



>mm_chr18_11290091_11291147
          Length = 1057

 Score = 1193 bits (617), Expect = 0.0
 Identities = 644/653 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgggtctgtgggtctatgagttaatgggtctatgatggtaattctgtaacaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaattcctgggtctgtgggtctatgagttaatgggtctatgatggtaattctgtaacaaa 798

                                                                       
Query: 65  attacatccttgctccgagactggaatctcttacagagatgtgcttttaatgctaatgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 attacatccttgctccgagactggaatctcttacagagatgtgcttttaatgctaatgtt 738

                                                                       
Query: 125 cttaagggctggggttattcaggtcatgagtgatgatcttactcatatctcttaagaggg 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 737 cttaagggctggggttattcaggtcatgagtgatggtcttactcatatctcttaagaggg 678

                                                                       
Query: 185 agtaaatatgtgtcagaagagctggtaatttactgaagaccctgggacttggttgcaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 677 agtaaatatgtgtcagaagagctggtaatttactgaagaccctgggacttggaagcaagc 618

                                                                       
Query: 245 ataagaaagatctctcactctcagttccttgagagtaatatggagagtgtgtaagattag 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 617 ataagaaagatctctcactctcaattccttgagagtaatatggagagtgtgtaagattag 558

                                                                       
Query: 305 tcacacacccccatactgtaagttctagaagaaagttctacttcgttgagtagataaata 364
           |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 tcacacacacccatactgtaagttctagaagaaagttctactttgttgagtagataaata 498

                                                                       
Query: 365 tttgcttaagccaaatcattagccttgtcttacataaaagtttctgactggctttacata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttgcttaagccaaatcattagccttgtcttacataaaagtttctgactggctttacata 438

                                                                       
Query: 425 caccatgaaggaattataaaaggaatggtctatttcctcaggtaaggagtgaggcatggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caccatgaaggaattataaaaggaatggtctatttcctcaggtaaggagtgaggcatggt 378

                                                                       
Query: 485 attccttgaggcccctgaaccccaaccaagagagacattgctctctagaggaggtcagct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attccttgaggcccctgaaccccaaccaagagagacattgctctctagaggaggtcagct 318

                                                                       
Query: 545 catgcaggtctcaagggaaaagtgagataacggggtagttgtgctagagacaaagatgga 604
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 317 catgcaggtctcaagggaaaagtgagataacagggtagttgtgctagaggcaaagatgga 258

                                                                
Query: 605 agactgtggagccttgttctcttcttaacaagagtcctgcacactggaaaagg 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggactgtggagccttgttctcttcttaacaagagtcctgcacactggaaaagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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