Query= MSMg01no198_n17.b1 MSMg01no198_n17.b1 CHROMAT_FILE:
MSMg01no198_n17.b1 PHD_FILE: MSMg01no198_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:13 2005
(697 letters)
>mm_chr18_43428531_43429628
Length = 1098
Score = 1290 bits (667), Expect = 0.0
Identities = 688/695 (98%), Gaps = 3/695 (0%)
Strand = Plus / Minus
Query: 5 gaattctcctaatttcctgtctgaacttgtctgacttaatcttaaaagagaatccaattc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattctcctaatttcctgtctgaacttgtctgacttaatcttaaaagagaatccaattc 839
Query: 65 tggccaatgagactgcagctttgaagaaacttcagttgtgctatacccacatttcaagcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tggccaatgagactgcagctttgaagaaacttcagttgtgctatacccacatttcaagcc 779
Query: 125 aaagtaggagctaatagatctgggttaaatcaatggttcatttcttacacaggatatcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aaagtaggagctaatagatctgggttaaatcaatggttcatttcttacacaggatatcaa 719
Query: 185 accaaggtgttatcacagcatctcttcttccgaagccaaacaataggattttgtggagta 244
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 718 accaaggtgttatcacagcatctcttcttctgaagccaaacaataggaatttgtggagta 659
Query: 245 acttaagatctgcatcagacaacaccatcca-tgtaaatttacctttgcacacgctctcg 303
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 658 acttaagatctgcatcagacaacaccatccactgtaaatttacctttgcacacgctctct 599
Query: 304 t-attcatatgtttacactaaattatccagtgagcatctaccttaattactgtgaggaat 362
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 598 tcattcatatgtttacactaaattatccagtgagcatctaccttaattactgtgatgaat 539
Query: 363 gttggtgattaaacatgggtgaaacattctcaactcataagggggaatttatgaatttat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gttggtgattaaacatgggtgaaacattctcaactcataagggggaatttatgaatttat 479
Query: 423 gcatttaggaatgatatgattctatgataacactgtggctccaaaggcaccattagaagg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gcatttaggaatgatatgattctatgataacactgtggctccaaaggcaccattagaagg 419
Query: 483 ataaccatgaccattgggaagatgtaactgagtgtgtgtgatggtggccgtttgtgtgtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ataaccatgaccattgggaagatgtaactgagtgtgtgtgatggtggccgtttgtgtgtg 359
Query: 543 cctagctaacgagagattcaaaacagcttatagtctttataatgcatgcccccaaattta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cctagctaacgagagattcaaaacagcttatagtctttataatgcatgcccccaaattta 299
Query: 603 aaagccttttgtgctgatgtggcctctgaaccactttttttttaaaatgatcaactatta 662
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 298 aaagccttttgtgctgatgtggcctctgaaccacttttttttt-aaatgatcaactatta 240
Query: 663 tcaaagctgcaacaacaaagttcatcttgctgacc 697
|||||||||||||||||||||||||||||||||||
Sbjct: 239 tcaaagctgcaacaacaaagttcatcttgctgacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1098
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1088
Effective search space: 747456
Effective search space used: 747456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_n17.g1 MSMg01no198_n17.g1 CHROMAT_FILE:
MSMg01no198_n17.g1 PHD_FILE: MSMg01no198_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:13 2005
(656 letters)
>mm_chr18_43350611_43351665
Length = 1055
Score = 1176 bits (608), Expect = 0.0
Identities = 645/658 (98%), Gaps = 3/658 (0%)
Strand = Plus / Plus
Query: 1 aaatgatgtgaagaattggaggtaccatttgaagtctagaacgtaaccgcttgttgtttg 60
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 201 aaatgatgtgaagaattggaggtaccatttgaagtctagaacggaactgtttgttgtttg 260
Query: 61 ctatttcatgtaaaataaaaatgactgactttggtcattaaaaaaaaaagaagtaatcac 120
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 261 ctatttcatgtaaaataaacatgactgactttggtca-taaaaaaaaaagaattaatcac 319
Query: 121 tgtaagactagacacactctccaattattctgtcccagaattctttaataaaactgaata 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 320 tgtaagactagacacactctccaattattctgtcccaaaattctttaataaaactgaata 379
Query: 181 tatattttattatattacatattaattttgtcacagttgcctatattta--atgtttata 238
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 tatattttattatattgcatattaattttgtcacagttgcctatatttaatatgtttata 439
Query: 239 taatagattacatatttatacaaaatatattctattagtataaagtatatgattgtaaaa 298
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 taatagattacatattcatacaaaatatattctattagtataaagtatatgaatgtaaaa 499
Query: 299 taatcttatatttctgcagtaaaggctcacagtcaagaaaccagtgcgctcgattcattc 358
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 500 taatcttatatttctgcagtaaaggctcacagtcaagaaaccagtgagctcgattcattc 559
Query: 359 taaaaagccacatgacattttcagaaggaagttaagcttcatgataggagagttaattac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaaaagccacatgacattttcagaaggaagttaagcttcatgataggagagttaattac 619
Query: 419 agcgcttacagtacaaatgtgctgccccagtttgtctctatggagaaataattatttcca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agcgcttacagtacaaatgtgctgccccagtttgtctctatggagaaataattatttcca 679
Query: 479 caaagttaatcagatgaatagctactgctgtgtggccagatctagatggctctaatagga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caaagttaatcagatgaatagctactgctgtgtggccagatctagatggctctaatagga 739
Query: 539 agcaggctagactcaataatggtcatttgaccatgaaaagggaagttcatcatgtcgaga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agcaggctagactcaataatggtcatttgaccatgaaaagggaagttcatcatgtcgaga 799
Query: 599 gaaatgagtgtggtttacaaaaagccagatgtacctgaagcatggggcagctattaca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gaaatgagtgtggtttacaaaaagccagatgtacctgaagcatggggcagctattaca 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space: 675070
Effective search space used: 675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
