BAC Information

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BAC

Clone NameMSMg01-201D21
Chromosome18 (Build37)
Map Location 3,178,129 - 3,178,462
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794
Downstream geneCrem, EG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666, Lyzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201D21.T7 (MSMg01no201_d21.b1)MSMg01-201D21.TJ (MSMg01no201_d21.g1)
ACCAG386874AG386875
length731699
length of high quality
(start - end)		353 (46 - 398)334 (74 - 407)
definitionCHROMAT_FILE: MSMg01no201_d21.b1 PHD_FILE: MSMg01no201_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:14 2005CHROMAT_FILE: MSMg01no201_d21.g1 PHD_FILE: MSMg01no201_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCACGAACCCCATCTGGTCCTGGGGTTTGTTTGGTTGGAAGACT
TTTTTAATGAGTGATGCTATTTCTTTAGGGGTTATGTGACTGTTTAGATT
GTTTATCTTATCCTGATTTAACTTTGGTACCTGGTAACTGCTTAGAAAAT
TGTTCATCTCATCCAGATTTTCCAGTTTTGTTAAGTTTAGGCTGTGTCAT
AGGATCTGATGGTTTTTTTAAATTTCCTCAGTTTTTGATGTTATTACTCC
CTTTTCAGTTCTGATTTTATTATTTTGAATACTGCCTGTGTGCCCTGCGT
TTAGTTTAGCTAACGCCCCATCTTTCTTGTTGATTTTCTCAAGGAACCAG
CTCCTGGCTTTGCCCACCCTCCCCCCAAGATCATGTTGTTGCGTTATTCG
TGCAATTTTTATTTTTTTACTCTTGTGCCATTCACTACTGATGTTGCCAT
ATTTTATGATCTTGTAATTATTTTTTTTTTTCTTCTTTTCTCTCTTTTGT
TCCCTTTTAGTTTTTTTTGTACTATTATCTCCTTATCCCGCTCTTATCAC
TTGAATTGCGTTCTTTACTTTTCCTATACCACTCTTTTTCTTTGTTCTGT
TTTTTTTGTTCACTCTCTCCGTTTATTTTCTATTTTCCTCTCCTTCTGTT
TTTTTACCCCCTCTTTCTTTTCTTTTTCTTG

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGATGCTGAGACAGC
TGCCTAGCTGATAAAAAGAGATCAATATTATTGCTTATTACAGTGTAGAC
CCAGGGCCTTTACTGGGCTTAGGGTTTCTTGTCAGCATTCACGTGGTGAG
TGCGAGGTGGGCAATCCACATTTGAACTTGAAACAATAAAAGACTCTTTT
TTCAAGTTGCAGCGGACTTTGCAATTCTTGGGCTTTCCCATGGATGCAGG
GCACAACACAGAAGCCATGTGGTAGCTCATAGCCTTCTGTATCAGAAGAG
GGATCTGATACCCTCTTCTGGTGTGTTGAAGATAGCAACAATGTACTCAT
ACACATACCCCCCCCGTAAATGGAGAGGAAACTGAGGAAAAGAAGGGACA
GGGATAGGCCAAAGTGGGACCCAGCTGAAAGGGAGGCTCCAAGACCTGAC
ACTATTACTGAGGCTATGGAGCACTCACAAAAAGGGACCTATCATGACTA
CCCTCAACAAGACCCAACAAGCAGCTGAAAGAGTGAGATGCAGATATTTG
CACAAACAATTGGACAATAGCTGCGGACCCTTGTGGGTGAATTAGGGGAA
ATCCGGAATAAGCTGAGGAGTGAAGCTACCCTGTATGAGTTCCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_d21.g1 MSMg01no201_d21.g1 CHROMAT_FILE:
MSMg01no201_d21.g1 PHD_FILE: MSMg01no201_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:14 2005
         (334 letters)



>mm_chr18_3178028_3178761
          Length = 734

 Score =  646 bits (334), Expect = 0.0
 Identities = 334/334 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggatgctgagacagctgcctagctgataaaaagagatcaatattattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 caggacagccagggatgctgagacagctgcctagctgataaaaagagatcaatattattg 376

                                                                       
Query: 61  cttattacagtgtagacccagggcctttactgggcttagggtttcttgtcagcattcacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cttattacagtgtagacccagggcctttactgggcttagggtttcttgtcagcattcacg 316

                                                                       
Query: 121 tggtgagtgcgaggtgggcaatccacatttgaacttgaaacaataaaagactcttttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tggtgagtgcgaggtgggcaatccacatttgaacttgaaacaataaaagactcttttttc 256

                                                                       
Query: 181 aagttgcagcggactttgcaattcttgggctttcccatggatgcagggcacaacacagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aagttgcagcggactttgcaattcttgggctttcccatggatgcagggcacaacacagaa 196

                                                                       
Query: 241 gccatgtggtagctcatagccttctgtatcagaagagggatctgataccctcttctggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gccatgtggtagctcatagccttctgtatcagaagagggatctgataccctcttctggtg 136

                                             
Query: 301 tgttgaagatagcaacaatgtactcatacacata 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 135 tgttgaagatagcaacaatgtactcatacacata 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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