Query= MSMg01no203_d11.b1 MSMg01no203_d11.b1 CHROMAT_FILE:
MSMg01no203_d11.b1 PHD_FILE: MSMg01no203_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:18 2005
(641 letters)
>mm_chr18_24994290_24995330
Length = 1041
Score = 853 bits (441), Expect = 0.0
Identities = 468/477 (98%), Gaps = 1/477 (0%)
Strand = Plus / Minus
Query: 165 tggcaggatctaagcaggcatggtgcaggaggagctgagagttctacatctttatctgaa 224
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1037 tggcaggatctaagcaggcatggtgcaggaggagctgagagttctacatcttcatctgaa 978
Query: 225 ggctgctagcagaatgctcacttccaggcattgaggatgaggttcttatagcccgtaccc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 ggctgctagcagaatgctcacttccaggcattgaggatgaggttcttatagcccgtaccc 918
Query: 285 agtgacacacctacttcaacagggccgcatcttctaacagtgccactccctaggccaagc 344
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 917 agtgacacacctactt-aacagggccacaccttctaacagtgccactccctaggccaagc 859
Query: 345 atatacaaaccatcacaaactccatctcgaacccgccattcactcattacccaaacagtc 404
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 858 atatacaaaccatcacaaactccatctcgaaggtgtcattcactcattacccaaacagtc 799
Query: 405 ttgcctccctctccatcccgagcacatgtgaagatcctacctctgcctctacttatatag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttgcctccctctccatcccgagcacatgtgaagatcctacctctgcctctacttatatag 739
Query: 465 ttcttagggaggaagccaggggtcaagggcacagttgctcttttccagccccagggggag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttcttagggaggaagccaggggtcaagggcacagttgctcttttccagccccagggggag 679
Query: 525 aagctatctagcaggaaagcttagcacgttttgagaaaagaacctgagggcccacggttg 584
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 678 aagctatctagcaggaaagcttagcacattttgagaaaagaacctgagggcccacggttg 619
Query: 585 tgatggacccaggaaagtctttgtaggagctgctcatccatcacaatgcaggagcag 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgatggacccaggaaagtctttgtaggagctgctcatccatcacaatgcaggagcag 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no203_d11.g1 MSMg01no203_d11.g1 CHROMAT_FILE:
MSMg01no203_d11.g1 PHD_FILE: MSMg01no203_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:18 2005
(237 letters)
>mm_chr18_24870614_24871250
Length = 637
Score = 358 bits (185), Expect = e-103
Identities = 224/237 (94%)
Strand = Plus / Plus
Query: 1 gacttagcagctggagaagacaggggctcactgtcattccagggccctgccagagtttag 60
||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 201 gacttagcagctggagaggacaggggctcactgtcattccagagccctgccagggtttag 260
Query: 61 ggaacacttctggggcagtgttctgagacaggcctgttgcacgagggtgagaactctggg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ggaacacttctggggcagtgttctgagacaggcctgttgcaagagggtgagaactctggg 320
Query: 121 aggttgaaggggaaagcacgagggtggactcacatacacacacgccagtcttcttagcct 180
|||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||
Sbjct: 321 aggttgaaggggaaagcatgagggtgtactcacatacacacacaccagtcttctcagcct 380
Query: 181 tgccctgccggtcacaagcttataaaagcatatagggttgtaagcctggacttcagg 237
|| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacctgcaggtcacaagcagagaaaagcatatagggttgtaagcctggacttcagg 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
