BAC Information

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BAC

Clone NameMSMg01-203L03
Chromosome18 (Build37)
Map Location 53,411,130 - 53,538,917
singlet/doubletdoublet
Overlap geneSnx24
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859
Downstream genePpic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203L03.T7 (MSMg01no203_l03.b1)MSMg01-203L03.TJ (MSMg01no203_l03.g1)
ACCAG388364AG388365
length739741
length of high quality
(start - end)
346 (120 - 465)202 (111 - 312)
definitionCHROMAT_FILE: MSMg01no203_l03.b1 PHD_FILE: MSMg01no203_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:56 2005CHROMAT_FILE: MSMg01no203_l03.g1 PHD_FILE: MSMg01no203_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,411,130 - 53,411,472)(53,538,718 - 53,538,917)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCATTTG
AGAATTCCCGTTTATCAACACTCCACAACCCACAATAAGATAGGCAGTGA
ACACTCTCGTGCTGCCCACAGGGGTTGTTGGCTCCTTTTGAGGGTGAAGC
TGGAAGACTGCAAATTGGAATCCACATGGGTGGCATAATGAGACCTTGTC
TAAAACAGATTATAGACAAAAACAGAGGTGCACTGCCAGCAGAAGCACTT
AGGTATGATAGCCAGATTGGCACAGGCGTAAAGTCCTCAAGAGATGAGCT
GTATTCATGAAGCAAGGCTCTAAGGAGAAATGCAGAGCTCTGCACCCGGT
TTATGGTCATTTGTTTGCTGTGTGGCTGAGAATTGAACCTGTGACCTCTT
GGATGCTAACCAACGGTGGATGCTAAGCAAGGGTGGGTAGGTGTTCCAAT
CCTGTTTGTTTGTTTGTTTGAAATCCTGTGTTTTACCCGAGTGTGTGTGT
GTGAGTGTGTGTGTGTCTATATAATTTCTCACTTTTGCTTGCCTTATCTT
ACAATCCTATTTTCCACTACTACACTCCTTCCCTCCTCCAACTCCTTGCT
CTCTTTCGTTTATCCTATCTTTTTCCCTTTTTTTTTCCCTTTGTTATTTT
TCTCCGTTCTCTTCTTTACCCTTATTTCGTTATCTACCTACCCCTCATAT
CTCTAAAACCACACTCAATTCAATTCACCTCCTTCTCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCCATTTACTGCTTCCGTGTTCTGTGCCTTCTACATACAACACAAT
GTGTCCCCAACAGTGCGTAGGGTTCCTAAACCTGAGGAACTGTTAGGGAA
AATATTTGACTCTCTCCAACTGGTGAAGCCCAGACCTCTACACCTGTCAG
GTGAGAAGCATTTTGGTGGCAGGACGCTCTAAGGTCCTGGGGTCAGTGCT
GTTTAGTTGTTATCCTAAGTCCCTGGTAGCAGGGTTTCCATGCTGCTCAC
CCATTCCTGCTAAGCTGGCATGAGAGGCCTGGCTAATAATTTATGAATAT
TGTGCAACTCACAACGAACTAGACTAATTAGAGAAAACTCCAGAAATAAC
TCCCATTGCATATTACAGGTCTAAGCACTGACAATAATACTGGTACTAGG
CACGAATAAACCCAGACCCAATATAGATAGTACCCGCTTCCACTCACATG
CTATGGGTCTCCAGCGGTGTGTGCCAGCATGAATGGGCTTCCTTCTATGA
TTTGGCCTATACAATCTGAATGCACTCTGTTTCCTTCAGTGCTAGTGATT
CTTCCCTTCCCGCTGCATTCCCAGGATTTACCTTATGAGCCGTGTATTTA
ACTTATTCTCCTGTATCGACGGACTCTTATTCCATTCGTATCGACCGCAA
CCTTCTAAAAATATTTTGTTTCCCAAAATCATTTTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_l03.b1 MSMg01no203_l03.b1 CHROMAT_FILE:
MSMg01no203_l03.b1 PHD_FILE: MSMg01no203_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:56 2005
         (346 letters)



>mm_chr18_53410930_53411675
          Length = 746

 Score =  601 bits (311), Expect = e-176
 Identities = 335/343 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggttgttggctccttttgagggtgaagctggaagactgcaaattggaatccacatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggggttgttggctccttttgagggtgaagctggaagactgcaaattggaatccacatgg 260

                                                                       
Query: 61  gtggcataatgagaccttgtctaaaacagattatagacaaaaacagaggtgcactgccag 120
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gtggcatagtgagaccttgtctaaaacaggttatagacaaaaacagaggtgcactgccag 320

                                                                       
Query: 121 cagaagcacttaggtatgatagccagattggcacaggcgtaaagtcctcaagagatgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 cagaagcacttaggtatgatagccagattggcacaggcgtaaagtcctcaagagaagagc 380

                                                                       
Query: 181 tgtattcatgaagcaaggctctaaggagaaatgcagagctctgcacccggtttatggtca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgtattcatgaagcaaggctctaaggagaaatgcagagctctgcacccggttgatggtca 440

                                                                       
Query: 241 tttgtttgctgtgtggctgagaattgaacctgtgacctcttggatgctaaccaacggtgg 300
           |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 441 tttgtttgttgtgtggctgagaattgaacctgtgacctcttggatgctaagcaagggtgg 500

                                                      
Query: 301 atgctaagcaagggtgggtaggtgttccaatcctgtttgtttg 343
           ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 atgctaagcaagggtgggtaggtgtcccaatcctgtttgtttg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no203_l03.g1 MSMg01no203_l03.g1 CHROMAT_FILE:
MSMg01no203_l03.g1 PHD_FILE: MSMg01no203_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:56 2005
         (202 letters)



>mm_chr18_53538518_53539119
          Length = 602

 Score =  356 bits (184), Expect = e-103
 Identities = 196/200 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgcgtagggttcctaaacctgaggaactgttagggaaaatatttgactctctccaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cagtgcgtagggttcctaaacctgaggaactgttagggaaaatatttgactctctccaac 341

                                                                       
Query: 61  tggtgaagcccagacctctacacctgtcaggtgagaagcattttggtggcaggacgctct 120
           |||||||||| |||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 340 tggtgaagcctagacctctacacctgtcaggtgagaagcattttgatggcaagaggctct 281

                                                                       
Query: 121 aaggtcctggggtcagtgctgtttagttgttatcctaagtccctggtagcagggtttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaggtcctggggtcagtgctgtttagttgttatcctaagtccctggtagcagggtttcca 221

                               
Query: 181 tgctgctcacccattcctgc 200
           ||||||||||||||||||||
Sbjct: 220 tgctgctcacccattcctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)