BAC Information

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BAC

Clone NameMSMg01-204F12
Chromosome18 (Build37)
Map Location 72,340,997 - 72,341,332
singlet/doubletsinglet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684, LOC100043411, LOC100042955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204F12.T7 (MSMg01no204_f12.b1)MSMg01-204F12.TJ (MSMg01no204_f12.g1)
ACCAG388760AG388761
length765749
length of high quality
(start - end)		213 (43 - 255)337 (78 - 414)
definitionCHROMAT_FILE: MSMg01no204_f12.b1 PHD_FILE: MSMg01no204_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:50 2005CHROMAT_FILE: MSMg01no204_f12.g1 PHD_FILE: MSMg01no204_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAACGGATCCGCGGA
ATTCATGGCTTTACATACATTTGTAGCAGAGAATGGCCCTATCTGACATC
AATCAGAGTAGAGGCCCTGGCTCCTGTGGAGCCTTGATGCCCCCGCATCG
GAGGATGCTGGAGCAGTGAGGTATGAGTAAGAAAGTAGGTGGAGGAGCAC
CCTCACAGAGACATAAGGGAGGGAAAAGAGGAGGGATTGGATGAGGAGAG
AGTGTGNNNNNNNNNNNTNNNTTTTTTTNTTTTTNNTTTTTTTTTTNNTT
TNNNNNNNNNNNNTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTTTTTTTCCCCCCCCCCTCCCCTTTTTTTTCTTTTTTTCTTT
TTCTCTTTTCTTCCCCCCCTCCCCAAAATAAAAATAATTCTTTGTTCACT
CCCTGCTTCTTTCCCATTCACTCTCTCATTCAAACTTCTTTCTCTCCTTT
TTTTCTTTCCCCTTTTTTTTTTTCCTCTTTTTTCATTTCTTTTAACCGCT
TTACCTTCCCTTATATCTCTTTCCTGGTATATTTCCTTTTATTATTACCT
TTCCTATCTATTACACTTCCTTTTTTTTCCATTTCTTATCTTCTTCATTA
TTCTAATTCATTCCTCTTCTCTTTTCATTCTGACGCCACCTTTTTTTTTT
TTTTTTACTATCTGATAATTCATTTCTTATCTTATCCCGTTTTCCTAATT
TTATTGTACTTCGTC

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTTCTAAGATGTTGACTTA
TTTGTCTAAGGATGAAAACATGAACATGAACTAATGAGATAAATGTTTCC
TGCTCTTCTTAATTAATAGATTTACAGCCTTGCTTGATTGTCTGCTGCTG
GTTCCTTGCCATCAGACATTAATGCAGTATGTTGTTACACAAGTCTATCT
TATGTCCAAACAATTATAGAATAGCTTGCTTAGGTCATAGCACTTTAGAT
AAAGATTATCAGTCAACTAGATTATGAAAATGTAGCACGTCATTGCTTTT
TCAATATTTTTTAGAATTAAGGCCAAGATTCCTACAAAGAAGCAAAAAGC
AGTCTTTGAAGGGCCCCCCCTATACTCATAGGCAGGGTACTTTTATTTAA
ACATAATAGAATTTTAAGTAAACTTTATTTCTAGAAGCACTTGTATGCCA
AATAAATTCGAATGACATAAATAAATTAAAGAATGAATATTTTGATACTC
TCCGATATTTTATTCCTCCTATACAATTTATTCTTTTCCCCCTTGGTACT
TACCACTCATTCCTTTCAATTTTTATACTCGATTACTCTTGTCGTTTCCT
CCTCTCTCCAACTTTGACCCTTCCCTTTCCTTAATCTGCACCCTTTTTTC
CCTTCCACATATCTTCTTTCCCTTTTGTCTTTTTTACTCCCTCTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_f12.g1 MSMg01no204_f12.g1 CHROMAT_FILE:
MSMg01no204_f12.g1 PHD_FILE: MSMg01no204_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:51 2005
         (337 letters)



>mm_chr18_72340797_72341533
          Length = 737

 Score =  611 bits (316), Expect = e-179
 Identities = 331/336 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagttctaagatgttgacttatttgtctaaggatgaaaacatgaacatgaactaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 536 cacagttctaagatgttgacttatttgtctaaggatgaaaacatgaatatgaactaatga 477

                                                                       
Query: 61  gataaatgtttcctgctcttcttaattaatagatttacagccttgcttgattgtctgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gataaatgtttcctgctcttcttaattaatagatttacagccttgcttgattgtctgctg 417

                                                                       
Query: 121 ctggttccttgccatcagacattaatgcagtatgttgttacacaagtctatcttatgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 416 ctggttccttgccatcagacattaatgcagtatgttgttacacaagtctctcttatgtcc 357

                                                                       
Query: 181 aaacaattatagaatagcttgcttaggtcatagcactttagataaagattatcagtcaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaacaattatagaatagcttgcttaggtcatagcactttagataaagattatcagtcaac 297

                                                                       
Query: 241 tagattatgaaaatgtagcacgtcattgctttttcaatattttttagaattaaggccaag 300
           ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 296 tagcttatgaaaatgtaacacgtcattgctttttcaatatattttagaattaaggccaag 237

                                               
Query: 301 attcctacaaagaagcaaaaagcagtctttgaaggg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 attcctacaaagaagcaaaaagcagtctttgaaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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