Query= MSMg01no205_k12.b1 MSMg01no205_k12.b1 CHROMAT_FILE:
MSMg01no205_k12.b1 PHD_FILE: MSMg01no205_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:34 2005
(598 letters)
>mm_chr18_41449081_41450082
Length = 1002
Score = 1081 bits (559), Expect = 0.0
Identities = 583/593 (98%), Gaps = 4/593 (0%)
Strand = Plus / Minus
Query: 10 attattgtgtattttcctcaattacatttagaatgctatcccaaaagtcccccataccct 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 attattgtgtattttcctcaattacatttagaatgctatcccaaaagtcccccataccct 943
Query: 70 cccccacacttccctacccacccattcccgttttttggccctggcattcccctgtactgg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 cccccacacttccctacccacccattcccgttttttggccctggcattcccctgtactgg 883
Query: 130 ggcatataaagtttgtgtgtccaatgggcctctctttccagtgatggccgactaggccat 189
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ggcatataaagtttgcgtgtccaatgggcctctctttccagtgatggccgactaggccat 823
Query: 190 cttttgatacatatgcagctagagtcaagagctccgggatactagttagttcataatgtt 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cttttgatacatatgcagctagagtcaagagctccgggatactagttagttcataatgtt 763
Query: 250 gttgcacctacagggttgcagatctctttagctccctgcatactttctctagctcctcca 309
|||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 762 gttgcacctatagggttgcagatctctttagctccttggatactttctctagctcctcca 703
Query: 310 ttgggggccgtgtgctctatttcttaatgcaggcagcatcaacacacctcagtctcttca 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 702 ttgggggccgtgtgctctatttcttaatgcaggcagcatcaacacacctcagtcttttca 643
Query: 370 actaaagaatattggacaggcttttaaaacattctatcatattcttcatcctag----aa 425
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 642 actaaagaatattggacaggcttttaaaacattctatcatattcttcatcctagaaaaaa 583
Query: 426 aaaaaacttacaaagaaaagcaaatgactcaacctccaaatacatttatcctcctgaagt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aaaaaacttacaaagaaaagcaaatgactcaacctccaaatacatttatcctcctgaagt 523
Query: 486 tgtttataagatatagaagttccctggtagaattttaggggtcgttgatgtatatgatga 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgtttataagatatagaagttccctggtagaattttaggggtcgttgatgtatatgatga 463
Query: 546 tataattggcgaatagcaattctttgacttcttcctttccagtttgtatcact 598
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 462 tataattggcgaatagcaattctttgactttttcctttccagtttgtatcact 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 1002
Length adjustment: 10
Effective length of query: 588
Effective length of database: 992
Effective search space: 583296
Effective search space used: 583296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_k12.g1 MSMg01no205_k12.g1 CHROMAT_FILE:
MSMg01no205_k12.g1 PHD_FILE: MSMg01no205_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:34 2005
(651 letters)
>mm_chr18_41342121_41343171
Length = 1051
Score = 1168 bits (604), Expect = 0.0
Identities = 640/654 (97%), Gaps = 4/654 (0%)
Strand = Plus / Plus
Query: 1 tgtaattttcacaatttcctgagccttataaaatttgttggctctttaatctcctggccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaattttcacaatttcctgagccttataaaatttgttggctctttaatctcctggccc 260
Query: 61 ttccttatccttgcagaagggaatatttcattttaaatgaacgaaattttaacaaactag 120
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 261 ttccttatccttgcagaagggaatatttcattttaaacgaaccaaattttaacaaactag 320
Query: 121 gagataaactaaattgactcacagtatagttttaatctatggaaatatatttaagattaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagataaactaaattgactcacagtatagttttaatctatggaaatatatttaagattaa 380
Query: 181 catgtacatgtatgtatttaattttgttaattttgatcagtagcattgattactagtctg 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacgtacatgtatgtatttaattttgttaattttgatcagtagcattgattactagtctg 440
Query: 241 taacatgtagcaagcacatgtatttatatgtatatcatatatatatgcaaatttaaggga 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 taacatgtagcaagcacatgtatttatatgtatatcatatatatatgtaaatttaaggga 500
Query: 301 acattttattttcaaccttttctttgattaatttat----ccacacactttatatcccaa 356
||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 501 acattttgttttcaaccttttctttgattaatttatttatctatacactttatatcccaa 560
Query: 357 ttgttgccccctccctcctctccaagtcccaccccttcatacttgcccctgcaccttctt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgttgccccctccctcctctccaagtcccaccccttcatacttgcccctgcaccttctt 620
Query: 417 taaagagagggagtcctacccataaccaccaccatcccacctgcttcaggtaccaaccca 476
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 taaagagagagagtcctacccataaccaccgccatcccacctgcttcaggtaccaaccca 680
Query: 477 cactggcatgtcaagtcacatcagcactaagcacatcctctcccgtttaggttattaggc 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 cactggcatgtcaagtcacatcagcactaagcacatcctctcccgttaaggttattaggc 740
Query: 537 atcctgcttaggggaaagaaatccaaagaaaagcaacagagtcagcgtcagcctctgctc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atcctgcttaggggaaagaaatccaaagaaaagcaacagagtcagcgtcagcctctgctc 800
Query: 597 taattgttagagtatccacatgatgctcaagctatacatctgctacatatgtgt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taattgttagagtatccacatgatgctcaagctatacatctgctacatatgtgt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
