BAC Information

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BAC

Clone NameMSMg01-206I12
Chromosome18 (Build37)
Map Location 73,205,640 - 73,205,961
singlet/doubletsinglet
Overlap genenone
Upstream geneDcc, LOC629684, LOC100043411
Downstream geneLOC100042955, Rkhd2, Smad4, Elac1, Me2, Mro, Mapk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206I12.T7 (MSMg01no206_i12.b1)MSMg01-206I12.TJ (MSMg01no206_i12.g1)
ACCAG390111AG390112
length729733
length of high quality
(start - end)
602 (45 - 646)340 (75 - 414)
definitionCHROMAT_FILE: MSMg01no206_i12.b1 PHD_FILE: MSMg01no206_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:44 2005CHROMAT_FILE: MSMg01no206_i12.g1 PHD_FILE: MSMg01no206_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCTGTTCAGGAATT
TTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCAACTTTCTCCTCTATA
AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTT
GACCTTAGTACAACCACATAAGTATGGATCGATTCGCATTCTTCTACATG
ATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTC
CACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGACTACTTGTCTGT
CTCTATACCAGTACCATGCAGTTTTTAATCACAATTGCTCTGTAGTAAAG
CTTTAGGTCATGCATGGTGATCCCACCAGAGGTTCTTCTATCCTTGAGAA
GACTTTTTGCTATCCTAGTATTTTTGTTA
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTTCTCTCTGGCCTTTAGATGCTG
AGGCAGAGACAATGAAGCAGACCAGATGTTGAAGCAGAGATGATAAAGGC
AGGGATGACGCTATAGCAGAGAAAACGCTGAGGCAGAGACGACACTGAGG
CAGAGGCACTAAGCCAGATTGTCTTTGCTAAGAGTAAAGTACAAAGTTAT
TATAGAACTAGGAAATGGGGGATATTTTTCACAGAAGACACAGCTGAAGC
ATCATCTCCTTAAGACGACAAGGTGACTGGCACAGCAAGATAACTTGCAT
ACAGCAAGTAAATCACTGACTGTCAACGTCAGCCATCTACACTTAGGACT
GTAGAGACACTGACACAACAGTGCTGAAGTGACTGAGCTGGGAGTATTTA
AGGAGTACGGGAACCAAGAGAACGTGACTTAAAGTTCACTGAGGTCCCAC
ATTGAAGGGTAGTATTTATGCTTCATTCTCTAGTTCAGAACATGTTTTTA
AGGTGCCCCTGTTATCTCAGTATTAAGTGTGTATCTTATGATAATTTTAC
CCAGTAAATACTGTATAAACTCTGAGTTAAGCTGGTATCGACTGTGCCAA
GTACACAAGCACCATTTGAAGAAGTGAGTATATCTCTACCTTGGTGGAAG
AAAAGAACTAACTCTAGCATATACAAAGGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_i12.g1 MSMg01no206_i12.g1 CHROMAT_FILE:
MSMg01no206_i12.g1 PHD_FILE: MSMg01no206_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:44 2005
         (340 letters)



>mm_chr18_73205423_73206162
          Length = 740

 Score =  563 bits (291), Expect = e-165
 Identities = 319/339 (94%), Gaps = 17/339 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttctctctggcctttagatgctgaggcagagacaatgaagcagaccagatgttgaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 218 tctttctctctggcctttagatgctgaggcagagacaatgaagcagagaagatgttgaag 277

                                                                       
Query: 61  cagagatgataaaggcagggatgacgctatagcagagaaaacgctgaggcagagacgaca 120
           ||||||||||||||||||                 |||||||||||||||||||||||||
Sbjct: 278 cagagatgataaaggcag-----------------agaaaacgctgaggcagagacgaca 320

                                                                       
Query: 121 ctgaggcagaggcactaagccagattgtctttgctaagagtaaagtacaaagttattata 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaggcagaggtactaagccagattgtctttgctaagagtaaagtacaaagttattata 380

                                                                       
Query: 181 gaactaggaaatgggggatatttttcacagaagacacagctgaagcatcatctccttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactaggaaatgggggatatttttcacagaagacacagctgaagcatcatctccttaag 440

                                                                       
Query: 241 acgacaaggtgactggcacagcaagataacttgcatacagcaagtaaatcactgactgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgacaaggtgactggcacagcaagataacttgcatacagcaagtaaatcactgactgtc 500

                                                  
Query: 301 aacgtcagccatctacacttaggactgtagagacactga 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacgtcagccatctacacttaggactgtagagacactga 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)