BAC Information

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BAC

Clone NameMSMg01-206K14
Chromosome18 (Build37)
Map Location 14,854,505 - 14,854,911
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp521, LOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446
Downstream genePsma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206K14.T7 (MSMg01no206_k14.b1)MSMg01-206K14.TJ (MSMg01no206_k14.g1)
ACCAG390192AG390193
length742810
length of high quality
(start - end)		688 (46 - 733)325 (77 - 401)
definitionCHROMAT_FILE: MSMg01no206_k14.b1 PHD_FILE: MSMg01no206_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:54 2005CHROMAT_FILE: MSMg01no206_k14.g1 PHD_FILE: MSMg01no206_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCGGACAACCGGATTCTTCTATGGCAAAACTTTATTGCTTCAT
CTGAAGGAAGACCCCGAACAAGGAAAATGGTGCCGCCTATATACCCCTCC
CTGTGACGTGTCAGCTCCTGATTAGCTGCTCACTCATCACCCCACTACTA
TGCCCCGGGATGGGCAGTGACTTGGCACGAATTTACTCTTGCACCTGCGC
ACATTACTTGTTTACCAGTTAGGCACAGTGGAGGCTCAAGATGGCGATTG
CTCATGGCTCTCCACAGATTTCTATATTGACAGGAATTCAGTTTTTCAAC
ATGGCCAAAGGAAACAACTGTAAGCATGACATTTTGTTGTAAAGTACAGC
CATTAATTGAAAGGACACGAAAGGCATTTTTCACACAAACAGATCATGTC
AATCACCAGCAGACAGTCACTAAAGGAAACAGTAACGGGTGTTCTTCAAG
CAGAAAGAAATGATCAAATAAGAAATAAAATTATTAATTTAACAAATACA
CACATATAAAATCAAATAAATATCAAGTGTCTGAAAGGATGACAGTCTCT
TATGGGTTTACAGAGGGCAATAAACGGCGTCAAAACTAATGCATAACATG
TAAAGGGACAAATGAAGCTGAAGTGCCCAGAGGTTTATTGTGTGAAAGAG
TAAATCTTCGCATTAATACTAGTGCTTAATGGGTCTAAAAGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAACCTCTGGATTGGGTGGTAC
AGTGACAATATGTTGTGAAGAACCCTGTCTAAGTAGACAGTCTTGGGGAT
GGGCGACATCAGAATGCCTCGCTTGGGGTCAGGAGTCCAGCGCAGCTGCT
ACACTGTTTGCCTAGTATTCACAACGCACCAGTGTGGATCCCAGCATTAC
AGACACCTGGCTTGATGATGCGCGCACGCCTATAGCCCCAGCACTCAGGC
AGTGTAGGCACAAGGCTCAGGAATTGAAGGTCACCTTCAGCAACCTACCA
AGCTGGAGCTCCACCTGGACTGCAAAGCAAGGGGTGGGGGGTGGGGGGNN
NNNNNNNNNNNNNNCCCCCCCCGTTTNNTNTTTTTCTCTTCTTCTTCTTT
TTTCCTTTCCTCTTCTTTTCTTTTTTTTTTTTTTTTTTTTTCTTCCCCTC
CCCTTTTTTCTATTTTTTTTCTTTTTTCCCCCCCTTTTTTCCCCTTTCCC
TTTTTTCCCCTTTTTTTCTCCCCTATTTTTCTCTTCATTTTTTCTCATTT
CTCTCCTTTATTTTCTCTCCCCTTACTCTTTCCTTCTTCTCATTTTCTCC
CCCTATCCCTTTTTTATTTCTCATTTTTATTTTCCCTTTTCTCTTTTTCT
TTATTTTCTTTTATTCTATTATACCCTCGTATCTTCTATCTTTTTCTTGT
AGCCATATTCCAAGCCCATACTGCTATTTATATGTATTCTTTATTCTTGT
CCCCACCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_k14.b1 MSMg01no206_k14.b1 CHROMAT_FILE:
MSMg01no206_k14.b1 PHD_FILE: MSMg01no206_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:54 2005
         (688 letters)



>mm_chr18_14853824_14854911
          Length = 1088

 Score =  772 bits (399), Expect = 0.0
 Identities = 405/407 (99%)
 Strand = Plus / Minus

                                                                        
Query: 282  ttgacaggaattcagtttttcaacatggccaaaggaaacaactgtaagcatgacattttg 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 ttgacaggaattcagtttttcaacatggccaaaggaaacaactgtaagcatgacattttg 1029

                                                                        
Query: 342  ttgtaaagtacagccattaattgaaaggacacgaaaggcatttttcacacaaacagatca 401
            ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1028 ttgtaaagtacagccattaattgaaaggaaaggaaaggcatttttcacacaaacagatca 969

                                                                        
Query: 402  tgtcaatcaccagcagacagtcactaaaggaaacagtaacgggtgttcttcaagcagaaa 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  tgtcaatcaccagcagacagtcactaaaggaaacagtaacgggtgttcttcaagcagaaa 909

                                                                        
Query: 462  gaaatgatcaaataagaaataaaattattaatttaacaaatacacacatataaaatcaaa 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  gaaatgatcaaataagaaataaaattattaatttaacaaatacacacatataaaatcaaa 849

                                                                        
Query: 522  taaatatcaagtgtctgaaaggatgacagtctcttatgggtttacagagggcaataaacg 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848  taaatatcaagtgtctgaaaggatgacagtctcttatgggtttacagagggcaataaacg 789

                                                                        
Query: 582  gcgtcaaaactaatgcataacatgtaaagggacaaatgaagctgaagtgcccagaggttt 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  gcgtcaaaactaatgcataacatgtaaagggacaaatgaagctgaagtgcccagaggttt 729

                                                           
Query: 642  attgtgtgaaagagtaaatcttcgcattaatactagtgcttaatggg 688
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  attgtgtgaaagagtaaatcttcgcattaatactagtgcttaatggg 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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