BAC Information

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BAC

Clone NameMSMg01-207C07
Chromosome18 (Build37)
Map Location 75,222,287 - 75,222,912
singlet/doubletsinglet
Overlap geneDym
Upstream geneMapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181
Downstream geneLOC628356, EG667777, Smad7, Gm672, Zbtb7c, 4833419G08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207C07.T7 (MSMg01no207_c07.b1)MSMg01-207C07.TJ (MSMg01no207_c07.g1)
ACCAG390484AG390485
length1,2051,228
length of high quality
(start - end)
622 (129 - 750)---
definitionCHROMAT_FILE: MSMg01no207_c07.b1 PHD_FILE: MSMg01no207_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:42 2005CHROMAT_FILE: MSMg01no207_c07.g1 PHD_FILE: MSMg01no207_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATATTTTNNNNNGACATTGGGCGCTATAGACTCCTAAGGGAGAGGATC
CGCGGAATTCACCCAACACTGCCTGCCCCACTTAACCCATCAAACACACA
CACACACACACACACACACACCCTCACACACACACACACACACCCCCCCT
CAGCACAGTCAACTCTCATTTTCATTACAGAATGGAGAGCAAGCCCGGCT
CAGGCAGAACTTACAAGAGTGGAGTGTCAGTGATTAGCTGTACCACGCTG
CAGAGCAACTCTTCCAGAAGGTCTTCAGAGTCAGAACCTAGTAAGAGACA
CAAAGGTTTGTTTTGACAACAGAGGAAATTACTTAGATGTTAAGTTTTCA
TTTCTAATAAGAAAAAATTTATTAGTATATATATATTCCAACACTATTTT
AACCTCTGAATAAAATCTATATCCTGAGCAAGCCAGCACCCAGCACAGCC
TTAATAACAACTTGACACAGTTTTCCTTTTGTATCCGTGTACGCGCCATA
GCACACGGGTGAGAGGCAGGAGGTAACTCCGTGGAGTGGTTTTCTCCTTC
TACTTTTACGTGCGTTTCAGAGTTAGAAAAGAGCATGACTTGCTTAACTA
CCTCACTGGCTCTATTCTTGCTTTCAAGATTGGGTCTCACTGTGTAGTCC
TCAACTGGCAAGCCTCCCCCAAATTCTAAGATTACAAGTATGTACTTGTA
ATCTTAGAGCAAGAAAGCGGGCCCTGGGCCTCACCTGCTGCAACACTCGG
GAGAGCAGCCCCAGCACCTCGCCTGGGCAGAGGGTGGAACTGGCCCTGTT
GTAAGGGTTGACAGTGAAACACGCCAAGGTGGTGAAAACACTAGAGCTGA
AAGCTTAAAAAATCCACAACCTCTTCCGCCCATAATCCAGGTTTTTGAAT
TGTTCCTCCCCCCTATTTATCCCCTCTTTGAAATTGTTATAATAGATGAA
AAAATCTTTTTCCTCCTAATCCAAAACTCTATAATTTCCTGTTCTAAGGG
TATTAACCAGTAATATTCCAAAAACTCACTCCAATCTATACCGTCTTTAT
TCCATACATATTATTACAGATCTGTGTATCCTTATTCTGTTGTCCTATTC
CATTCTATTATTTTTTTCAAATCAATAGTATCTATTATTTTTCAACTATT
CTCATTCATATCTTTAACTAACTTTTATTTTATCTTATTAATATAAATAT
TATTT
CCCGGCATATNNNTAAGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGACCATTAGNGGGCNNCNGGANNCNGN
GAGNANNNGNANNCANGCTTTTAAGGANANANANACCCACACAGAGANAN
ANANANAGANANANANAGAGANANANANANNNAANNNAAAACTCAAAGGG
GAAANCNAAAAAAAGGGNCAGCACGGGGACAGCCAAAAGCANAAGAAAGA
ANCAAAGGCCGGANAANCANCANNNCACAAAAGNNGGGGGCGGCACCACA
CAGCCCNCGNAAGGGGANNACCACACGGAGGACGGACAGNATTTGGACAN
NNCACCCGGAGGCGGAGACAGGGGAAAAAAAAAGACANANNCNAGACCNN
NCCNCGGGAGTTTTTTTTTTGNNGGGCCNACANGNNNANAAAANANANAN
AAGAGAGCGCGCGCGTGTGTGCCCCCCCCCCNNNNNNNNNNNNNNNNAAA
AAAAAAAGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCNNNNNNNNNNCNNNNNNNNNCNNNNNNNNNNNNNNNCNNNNN
NNNNCCCNNNCCNNCCCCNCCCCCNCNCCNCCCCCCNCNNCCNCCCCCCC
CCNCCCCCCCNNNCNNCCCCCCNNNNCCCAACCNCNCNNNCCCCACCACC
AACAACAACAAAACACACAAAACAACCANCAAAACAAACAAACAAACAAA
AAAAACCAAAAAAAAAACAAAAAAAAACCATTTTTTTTTTTTTTAACAAC
CAACAAAAAAAAACAAACAAAAAACCAAAAAAAAACAAACAAAACACAAA
AACCAANAAACAAATTTTTTTTATTTTTACAANAAAAAAAAAAAACACAA
CACAAAATATATATTTANACAACACAACAACAAACCAAAACAAACCATAA
AAACAATAAANACACAAAATAAAAAAAAACAAAAACCANAACAAANAACA
TAAAACAAAACAAACAAAACACATACAACAAAAAAACACCACAATCAACA
ACAACAAAATACAACAAAACCAACAACACACAACTAAATCACTNACTACA
NATAGAAACAAAATTACAAACCATCAAAAAACAAACAAACACACACAAAA
AAAATACAAATCATANAAACAATTCACCATACACCTTAACCACTCATCAA
ACAACAAATAACAAACATCTCAATCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_c07.b1 MSMg01no207_c07.b1 CHROMAT_FILE:
MSMg01no207_c07.b1 PHD_FILE: MSMg01no207_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:42 2005
         (622 letters)



>mm_chr18_75221894_75222912
          Length = 1019

 Score = 1029 bits (532), Expect = 0.0
 Identities = 602/630 (95%), Gaps = 13/630 (2%)
 Strand = Plus / Minus

                                                                        
Query: 2    acacacacacacaccccccctcagcacagtcaactctcattttcattacagaatggagag 61
            ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1019 acacacacacacacccctcttcagcacagtcaattctcattttcattacagaatggagag 960

                                                                        
Query: 62   caagcccggctcaggcagaacttacaagagtggagtgtcagtgattagctgtaccacgct 121
            |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct: 959  caagcccggctcaggcagaacttacaagagtggagtatcagtgattaactgtaccaagct 900

                                                                        
Query: 122  gcagagcaactcttccagaaggtcttcagagtcagaacctagtaagagacacaaaggttt 181
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 899  gcagagcaactcttccagaaggtcttcagagtcagaacctagtaagacacacaaaggttt 840

                                                                        
Query: 182  gttttgaca------aca--gaggaaattacttagatgttaagttttcatttctaataag 233
            |||||||||      |||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  gttttgacaaggtagacaatgaggaaattacttagatgttaagttttcatttctaataag 780

                                                                        
Query: 234  aaaaaatttattagtatatatatattccaacactattttaacctctgaataaaatctata 293
             |||||||||||||  || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 779  -aaaaatttattag--tacatatattccaacactattttaacctctgaataaaatctaga 723

                                                                        
Query: 294  tcctgagcaagccagcacccagcacagccttaataacaacttgacacagttttccttttg 353
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 722  tcctgagcaagccagcacccagcacagccttaacaacaacttgacacagttttccttttg 663

                                                                        
Query: 354  tatccgtgtacgcgccatagcacacgggtgagaggcaggaggtaactccgtggagtggtt 413
            |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  tatcggtgtacgcgccacagcacacgggtgagaggcaggaggtaactccgtggagtggtt 603

                                                                        
Query: 414  ttctccttctacttttacgtgcgtttcagagttagaaaaga-gcatgacttgcttaacta 472
            ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 602  ttctccttctacttttacgtgcgtttcagagttagaaaa-acgcatgatttgcttaacta 544

                                                                        
Query: 473  cctcactggctctattcttgctttcaagattgggtctcactgtgtagtcctcaactggca 532
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  cctcactggctctatttttgctttcaagattgggtctcactgtgtagtcctcaactggca 484

                                                                        
Query: 533  agcctcccccaaattctaagattacaagtatgtacttgtaatcttagagcaagaaagcgg 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483  agcctcccccaaattctaagattacaagtatgtacttgtaatcttagagcaagaaagcgg 424

                                          
Query: 593  gccctgggcctcacctgctgcaacactcgg 622
            ||||||| ||||||||||||||||||||||
Sbjct: 423  gccctggccctcacctgctgcaacactcgg 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1019
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1009
Effective search space:   617508
Effective search space used:   617508
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)