BAC Information

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BAC

Clone NameMSMg01-208G23
Chromosome18 (Build37)
Map Location 47,154,656 - 47,154,941
singlet/doubletsinglet
Overlap geneCommd10
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241
Downstream geneEG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208G23.T7 (MSMg01no208_g23.b1)MSMg01-208G23.TJ (MSMg01no208_g23.g1)
ACCAG391318AG391319
length688711
length of high quality
(start - end)
318 (35 - 352)285 (81 - 365)
definitionCHROMAT_FILE: MSMg01no208_g23.b1 PHD_FILE: MSMg01no208_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:15 2005CHROMAT_FILE: MSMg01no208_g23.g1 PHD_FILE: MSMg01no208_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGTCT
CTTGGCTGCCTGCGGAAGACAGTTTCCGTTTCCTTTTGGCTGTCTTCCTA
TCAAGATGTAGAATTCTTGGTTTATCCAGCACCAAGTCTGCCTGTAGGCT
GCCATGCTTCCTACCATGATAGTAATGGACTGAACATCTGGAACTGTCAG
CCAGCCCCAGTTAAATGCTGTCCTTTATAAGAGTTGCCTTGGTCATAGTG
TCTCTTCATAGCAATGAAGCCCTCACTAAGACAACAGCTTTCTAACATTT
TGAGGTGACATTCCTCCCCAGTTTAGTTTCACATATTCTTGTTACGTGTT
TCTGAACACCCCCGCCATGCCTGTTGGTAGGTTCTGTTTTTTTTTTTTCT
TTTTCGCCCCCATGATGATTTTTTTTAATTCTCCATTTTTAATTTTTTTG
TTAAGATTTATTTTTATTTTTAAACTTTGTGTTCATGTGTGTGTATACAC
ATGATTGCGTGTGTGTGCGTGTATGCATGACCCTTGTCTTTTGACGCCCT
AATTTTATTTATTTTCCATATTTCCCCACCTCCTCTTAACCCTACTTACC
TTCCCCTTCATTTTTATACGCTTATTCTTAAAATTTACTAAATCCCCCCC
CCACAAAGAAATTTCTCCCTTTTTCTTCCCATTTATTG
ATATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGGATTAAACATCAGA
AATTAATTCTTTCCACATCTGATTTATGCTCCAAACATGATTAAGAATAA
GAAAGTATTCTTTAATGTGATTTATGCTAATAAAGATGTGATATAGCATA
CCTTAAAATATATATAGAATGTTCACACCTACATTTAAAGACATCTTAGA
AAAATCTGTAGGTGCAACTAATTAAATCACTACTATACAGTAGAATACCT
TTAAGGGGATCCCAGTATTTTAAATTGCCATAACAAGAGTTCAGGATTTA
ACTGAGATATATAACCTTTTTAAATCCCACCGCCCATTTTCCCCTTAAGT
AACATAGTCTGTTTAAAGGCTTCCCCCAACGACACATATTATCCTTATAC
CAAGATGTGCTTAAAAAAAGAAAAGTAGGTTCAATTGAAATATGGTCCAT
ACATAAACATGGATACACTCACTCTGCAGAAGTAAACTAGTATCTCTTAA
TGACAAAATTATCACCTCCCCGAACTAAATCACATAAAAAGAAAACTGGA
AACCTAGAATATAGTTCTTAAGAAGAAAATGAACAACAAAACCTTGGATT
TTTAAATAACATTCAACATCAAAAAATATGTGTGATCTTCCAGCATGCAT
CACTGAGTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_g23.g1 MSMg01no208_g23.g1 CHROMAT_FILE:
MSMg01no208_g23.g1 PHD_FILE: MSMg01no208_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:15 2005
         (285 letters)



>mm_chr18_47154456_47155141
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagggattaaacatcagaaattaattc-tttccacatctgatttatgctccaaacatg 59
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 486 agcagggattaaacatcagaaattaattcttttccacatctgatttatgctccaaacatg 427

                                                                       
Query: 60  attaagaataagaaagtattctttaatgtgatttatgctaataaagatgtgatatagcat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 attaagaataagaaagtattctttaatgtgatttatgctaataaagatgtgatatagcat 367

                                                                       
Query: 120 accttaaaatatatatagaatgttcacacctacatttaaagacatcttagaaaaatctgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 accttaaaatatatatagaatgttcacacctacatttaaagacatcttagaaaaatctgt 307

                                                                       
Query: 180 aggtgcaactaattaaatcactactatacagtagaatacctttaaggggatcccagtatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aggtgcaactaattaaatcactactatacagtagaatacctttaaggggatcccagtatt 247

                                                         
Query: 240 ttaaattgccataacaagagttcaggatttaactgagatatataac 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ttaaattgccataacaagagttcaggatttaactgagatatataac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)