BAC Information

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BAC

Clone NameMSMg01-208J12
Chromosome18 (Build37)
Map Location 72,365,260 - 72,365,545
singlet/doubletsinglet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684, LOC100043411, LOC100042955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208J12.T7 (MSMg01no208_j12.b1)MSMg01-208J12.TJ (MSMg01no208_j12.g1)
ACCAG391426AG391427
length1,102726
length of high quality
(start - end)
---287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no208_j12.b1 PHD_FILE: MSMg01no208_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:27 2005CHROMAT_FILE: MSMg01no208_j12.g1 PHD_FILE: MSMg01no208_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAATAAAGCGGAGGTCGGACGGNACGANNNNNNNNNNNNNNNNNGNCC
CAANNNGGGGCGGGGGGGGGCGGGAGAGAAATTTACCCCAGAAGGAGAGG
GGCNCNGAAAAAAAAAGAGACACAGAAAACGAAGGAAAACCCGCCGCGGT
TTTTTCTCCCCCAAAAAACGGGGGGGGGGGGANNGGANGGGGGCGGGGGG
GGGAGGAGAGGGCGGAGAGGAGAAGGAGGGGAGGAGGCGGGAGGGGAGAG
GAGGACGCAGGGCGGAGAGGTGAGACGAAGGGGAGAGGCGAGAAGGGGGG
GGGAGGAGGGGGGGGGGCGGGGAGGGCAAGAGGGGGGGAGGGAGGGGGGA
GGAGGGGGGGGGGGAGGGGGAGGAGGTGGGGGAGGCGCGGGGCGAAAGAA
AACAGAGGCAAAAACGAGCGCGGGGGTGGGAGGGGAGGAGACATGGACGG
GGGGAGCGGGGGGGGGGCGCGGGGAGGCGGGAGGGGGGAGGGGTGAGTGT
TGTTATGTTGGCGGCCCCCCGCCCCCCCGCGGGGGGGGAGGAAGAAGAGA
GGGAAGGGGGGGGAGAGGAGGGGGGGAGGGGGGGAAAAAAAAAAAAAAAA
AAAAAAAAAAGAGAGGGGGGGGGGGGGGGGGGGGGGGAGACGAGGCTAAA
GAGGGAGGGGGAGGGGGGGCGGGGGAGGGGCGGGAGAAGGGGGGGAAGGA
AGAGCGAGGGAGGGAAGGGGGCGGGCGGAAGGAGAGGGGGGAGGGGGAGG
GGGGGAGGGGAAAGAGGAGGAGAGGGAGGGCGGAGGGGCGAAGGAAGAAG
GGAGGGGCGCGCGAGAGAAGGAGGGGAGATGGGGAGAGTGAGGAGCGGGG
GGGGAGGGGGGGAGGAGGGGGGCGAGGGATGAAAGAGGAGGGGCGAGGAG
AGGGAGGGGGAGAGGAGAGAGGGAGCAGGCGAGAGAAGGGAGAGGAGGGT
GAGGGAGAGGAGGAGGGGGACAGGAGGAGACGAAGACGAGGGGGGGAGGG
GAGGAGGAGTGGGAGGAGAGGGGGACGGATGAGAGGAGAGAGGGGGGAAG
GAGAAGTAAGAGGAGGNAAGAGGTGGGGTAGAAACGGAGGAGAGAGGAGG
CG
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAAAAGGATCCTGAAGAGAGA
TCAGAGATTTACTTGAACAACACAACAGTGTTGATGTGTAGAAGCTAGGA
AGGTTAGGGTTCCACAGCTAGGTAGTCATCTTTGTCTGGTATATGGAAGA
GTGAAACTAGCATAAACTTGAGGATGCAGAGATATGTTAGGCACAAAACA
AATATGGCTAAGGTTATACCCTGGGACAAAAAGTAATGAAAATAAAGGAA
AGAGCAAAGATCTCTGATGTACAGTGAAAACCAGCTAAGAACAATGGCAT
TAGCCAAATATATTTTATAATTCTACCCCGCCCGTGGTAAGTTTTTAAGA
AAAATTCTGAAATGTTCACCCCACTTTTAATAATCTTTAAATTTAGCAAT
GCAGGGCCATAAAGATGGCTCAGCTGTTAAAGGTGCTTGCAGTCAAACCT
GAAAAATAGAGTTTTATCTCCTGAACACAGATGGTACAAGGAAACTTGTA
CTCTGAAACTGTCCTCTGACCAGGACACATGTAACATAGGACACACACAC
ACACACACACACACACTCACATACATACACACCAACATACACACACACAC
ACACTCACACACACACACACACTCACCAAATAGAGAAATGTATCATTTTT
TTTTTACATTATCAATACAATACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_j12.g1 MSMg01no208_j12.g1 CHROMAT_FILE:
MSMg01no208_j12.g1 PHD_FILE: MSMg01no208_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:27 2005
         (287 letters)



>mm_chr18_72365060_72365746
          Length = 687

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaaaaaggatcctgaagagagatcagagatttacttgaacaacacaacagtgttgatg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 486 aagaaaaaggatcctgaagagagatcaaagatttacttgaacaacacaacagtgttgatg 427

                                                                       
Query: 61  tgtagaagctaggaaggttagggttccacagctaggtagtcatctttgtctggtatatgg 120
           | ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 426 tatagaagctatgaaggttagggttccacagctaggtaatcatctttgtctggtatatgg 367

                                                                       
Query: 121 aagagtgaaactagcataaacttgaggatgcagagatatgttaggcacaaaacaaatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aagagtgaaactagcataaacttgaggatgcagagatatgttaggcacaaaacaaatatg 307

                                                                       
Query: 181 gctaaggttataccctgggacaaaaagtaatgaaaataaaggaaagagcaaagatctctg 240
           ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 306 gctaaggttatacccggggacaagaagtaatgaaaataaaggaaagagcaaagatctctg 247

                                                         
Query: 241 atgtacagtgaaaaccagctaagaacaatggcattagccaaatata 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atgtacagtgaaaaccagctaagaacaatggcattagccaaatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)