CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGACAAAATTGATGCAGCACAGCAAGGGCTGGGCTGTACTTGCT
CTTGACTCAAATGACAGGGTTCAGTACCACACCCTGGAATGTCTTGAATC
TGAATTTCAGGAATATTCTGTATGACTGCCTGTGACAATAGTGCCACTTC
CAAAGCAAAAACATGTTTTGTTTTTGTGTGTTTGTTTGTTTGTGTGTGTG
TGTTTATATNTNNNAATAATATAAATAATATTATATATTAATTTTTATAA
ACAAAAATATATCATTTTTTTTAAATAAAAATTACNTATAAAAAAAAAAA
AAATATTTTTTTTTTCCCCCCCCCCCCCCCCCCTATTTATATTTTTTTTT
TTTTTTTTTTTTTATTTTTTCCCCCCCCCCAAAAAAAAAAATTTTTAGTT
GATTGTGACTGTATCTTCACTCTTTTTTTATTTTTTCTTTTTACTCATCT
AACTCCATTACCTTTTTTCTCTCTCTTTTCTAAATTAATTTTTTATTTTT
TTTTCTCATCTTATCCCACCCTACACGTCAACCTTTTTCAATAACATATA
CTAACTTCACCAACCTATTCCTATCTCATAACACACAAAATTCTAATATT
ATTTAAACTCCTCATATTTCTCATATATATTTTCACCTAACTCTCATATA
TATTTTTTTCTTTTCCCATTCTCTCCTCTCTTTCTTTCACCACCGTAATC
CTTTTATTTTCATTAAAATACCCAACCTATATTTAATAACTAAACTTAAT
TCCTTTTCTCTCG

TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTAGCTGTTTAATGTCTTTCT
TTACCAGTCAGCTATGAAGTTCCACGGATGAAGACACAATGCCAGTCTTC
CTTAATGTAGCATTTCCTGCCCTACCTGCAGACTGGAGAAACCATAGCTG
CTGGGCAAAGGTATCTTTATTAATGATTTACTATCAGTGTGGTTGTTTGT
CTGTGACATAATGAGCTCTTCTTAATATGACCTTCAGTGTCCACTGGGGG
AGTAGGTGGCACAGATGATTGAGATGAAGAGGCCAGGTGACTTGAGAGGA
GATTATTTCATGNTTTTCCCCNTACGTTCCCCCCCCAGATTACACAGAAC
TATGATATTTTCCAAACCCCCAAAAAAAAAAGACTTTTAGGAATTGCCTG
ACTTTTTGCTTAGGTCATCAAAACTTCACAGAAAGAGTAAGTGGAAAGAA
CAGACAGATTTAAAGTAATTGATCAGAATACAAATTTAATCATTCTCTAG
TGAGAATAAAATTTGAATATTGTTGCTATAGTTTTCACTTATTTCCTACT
AGCACGTTGACAGTGTTCAATGTGAAGCCCAAAAAATGTCATTTCATATT
ACCACCTGTAATACATGGTAAAAGGAATAAATGATAAAATCCGGAATCTT
ATTCAAAAACTTCTCGCC

Query= MSMg01no208_k04.b1 MSMg01no208_k04.b1 CHROMAT_FILE:
MSMg01no208_k04.b1 PHD_FILE: MSMg01no208_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:30 2005
         (207 letters)



>mm_chr18_29681611_29682217
          Length = 607

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagacaaaattgatgcagcacagcaagggctgggctgtacttgctcttgactca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagacaaaattgatgcagcacagcaagggctgggctgtacttgctcttgactca 264

                                                                       
Query: 65  aatgacagggttcagtaccacaccctggaatgtcttgaatctgaatttcaggaatattct 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatgacagggttcagtaccacaccctggaatgtcttgaatctgaatttcaggaatattct 324

                                                                       
Query: 125 gtatgactgcctgtgacaatagtgccacttccaaagcaaaaacatgttttgtttttgtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtatgactgcctgtgacaatagtgccacttccaaagcaaaaacatgttttgtttttgtgt 384

                                  
Query: 185 gtttgtttgtttgtgtgtgtgtg 207
           |||||||||||||||||||||||
Sbjct: 385 gtttgtttgtttgtgtgtgtgtg 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no208_k04.g1 MSMg01no208_k04.g1 CHROMAT_FILE:
MSMg01no208_k04.g1 PHD_FILE: MSMg01no208_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:31 2005
         (278 letters)



>mm_chr18_29698192_29698869
          Length = 678

 Score =  514 bits (266), Expect = e-150
 Identities = 275/278 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttagctgtttaatgtctttctttaccagtcagctatgaagttccacggatgaagacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 acttagctgtttaatgtctttctttaccagtcagctatgaagttccacggatgaagacac 419

                                                                       
Query: 61  aatgccagtcttccttaatgtagcatttcctgccctacctgcagactggagaaaccatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aatgccagtcttccttaatgtagcatttcctgccctacctgcagactggagaaaccatag 359

                                                                       
Query: 121 ctgctgggcaaaggtatctttattaatgatttactatcagtgtggttgtttgtctgtgac 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctgctggacaaaggtatctttattaatgatttactatcagtgtggttgtttgtctgtgac 299

                                                                       
Query: 181 ataatgagctcttcttaatatgaccttcagtgtccactgggggagtaggtggcacagatg 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 298 ataatgagctcttcttaatatgaccttcagtgtccactgggggagtgggtggcacagatg 239

                                                 
Query: 241 attgagatgaagaggccaggtgacttgagaggagatta 278
           | ||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatgagatgaagaggccaggtgacttgagaggagatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)