BAC Information

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BAC

Clone NameMSMg01-208N23
Chromosome18 (Build37)
Map Location 19,629,172 - 19,629,456
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624
Downstream geneLOC665629, Dsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208N23.T7 (MSMg01no208_n23.b1)MSMg01-208N23.TJ (MSMg01no208_n23.g1)
ACCAG391610AG391611
length729730
length of high quality
(start - end)
318 (46 - 363)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no208_n23.b1 PHD_FILE: MSMg01no208_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:49 2005CHROMAT_FILE: MSMg01no208_n23.g1 PHD_FILE: MSMg01no208_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAACAAAGAATCAGCAAAACCAAAAGTTGGTTCTTTGACACAAC
CAACAAGATAGATAAACCCCTAGCCAAACTAACTAAAGAGCCAAGAGGCA
GTAATCAAATTAATAAAATCGGAAAGGAAAAGGGAGACAAAAAAGAAACA
GAGGAAATTGAAAAATAAAGTCATCAAATCCTACTATAAAAGCCTATAAA
CAAAACTGGAAAATCTAGATGAAATGGATGGTTTTCTAGAGAGATGCCAC
ATAGTAAAGTTAAATCAAGAGCAGATAAACTATATAAACAGGTCCATATC
ACACAAGGAAATATAATAAGTCATTAACCAGCTCCCAACCAAAGAAACCA
AAAACCAAACAAACAAACACAAACAAACAAAAAACAAAACAAAAGAAGCC
CAGGGCAAGATGGATTTAGTGCAGAATTCTACCAGACCTTCAAAGAAGAC
CTGATACTGCCTACTGCTGGGCGGTGGTGGAGCACACCTTTAATCCCAGC
ATTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGGGGCCAGCCTGGTC
TACATAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCANAA
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCAGATAGCCGCATGGGACAG
GAGGATATGGCAAGCATATTTGGAGTAAGTATAGATGTTTATGGATTATC
CCTGTGACAGTTGAAATGAATGGGTAAGTGCTATTAGTGCACCCTGTTGA
CTGGTGGTATGAGCAAGGAGGGCTGGAGCACAACCACCTCTGTGTCTGAA
ACTATCACATAGCCAGTTCTTCTGCCTCCTTCTTGTAAAAAGGAACTGCC
ATCTATATACCAGGTATAGAGGGCCTGTGGCATTGTGCCCTCCTGTAGAT
GTGACAGATGATTTTTTAGTTCTAACGCTTCCGTGCAGGAGTGAGATAGT
GAGTGGTTAGTATTTGGCCAACGAACAAAACAGGAAATATTAAGAGGCAG
GCATGATTGGAAAGTGTGGTGTCTTCAATTAGTGTTATCTAAAGGGAAAG
AACCCTGGAAAGAGGTAAAGTTTGTAAGCCTTTGTAAGTTAGGGTTGTGA
CTTAAAGGAAAGAAGACAGTGATAGGTGATCCAACATAGAGTTTTTTGGA
CTCTCAAATAAGGAGTTCAGTGGATGCTAAGGTATATATATAAGGTGCCC
ATCCCTGGATGGTTAGGTCTAGTTTTTTGACAAGTATGCTACAGGTACAA
AAGAGGGTCCCAGTTGGTGGACCAGGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_n23.g1 MSMg01no208_n23.g1 CHROMAT_FILE:
MSMg01no208_n23.g1 PHD_FILE: MSMg01no208_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:49 2005
         (287 letters)



>mm_chr18_19628972_19629658
          Length = 687

 Score =  474 bits (245), Expect = e-138
 Identities = 275/285 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcagatagccgcatgggacaggaggatatggcaagcatatttggagtaagtatagat 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctttcagatagcagcatgggacaggaggatatggcaagcatatttggagtaagtatagat 426

                                                                       
Query: 61  gtttatggattatccctgtgacagttgaaatgaatgggtaagtgctattagtgcaccctg 120
           ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 425 gtttagggattgtccctgtgacagttgaaatgaatgggtaagcgctattagtgcagcctg 366

                                                                       
Query: 121 ttgactggtggtatgagcaaggagggctggagcacaaccacctctgtgtctgaaactatc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgactggtggtatgagcaaggagggctggagcacaaccacctctgtgtctgaaactatc 306

                                                                       
Query: 181 acatagccagttcttctgcctccttcttgtaaaaaggaactgccatctatataccaggta 240
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 305 gcatagccagttcttctggctccttcttgtaaaaaggaactgccatctatatatcaggta 246

                                                        
Query: 241 tagagggcctgtggcattgtgccctcctgtagatgtgacagatga 285
           |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 245 tagagggcttgtggcattgtgccctcctgtagatgtgacagatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)