BAC Information

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BAC

Clone NameMSMg01-209O03
Chromosome18 (Build37)
Map Location 47,318,682 - 47,338,084
singlet/doubletdoublet
Overlap genenone
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120
Downstream geneSema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209O03.T7 (MSMg01no209_o03.b1)MSMg01-209O03.TJ (MSMg01no209_o03.g1)
ACCAG392231AG392232
length766725
length of high quality
(start - end)		367 (45 - 411)518 (77 - 594)
definitionCHROMAT_FILE: MSMg01no209_o03.b1 PHD_FILE: MSMg01no209_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:11 2005CHROMAT_FILE: MSMg01no209_o03.g1 PHD_FILE: MSMg01no209_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,337,722 - 47,338,084)(47,318,682 - 47,319,199)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACAGTCCACGTGAACCATTATTTATTTAGCCATCCCTTTCGATGA
ATACTAGGGTTTATTCTACCCTTTGGCTGTTGCAGCAACATGGGAATCAG
CCTTTTACATAACACTGAATGCATGCACAAGCAATGGGACTCAATGTCTA
GGAGTAAATTATTTCCAAATATGATCACACATGACCACACCCCCTTTACT
TGGACTCAAACCTCACCCATAGACCATGTAATAGGAAACAAAACTCCTTC
AAATGCATATCCCTGATACTTCTGGAGGTTTGTGCATACTGGTTGTTGAG
CCAGAGATATGGTGGACACTCATTTCTGGGATCTTCTTTGGGATATGCTG
GGTCTGTAGTTTACCCGCAGTTGAAGAAGGGTAGTGTGGCCCTTGCCTTT
TCCTACCTTTTCCTCCCTACATCCCTTATCTAACCTTATCTACCCCTTTC
CCTACTAATTTTCCTCTCTTTCCCTTTTCTTTATTTCTCACCTACTTCCC
CTCTTTTTTATCCCATACTCACCTATCTACCCTCATCTCCTTATCCTTCC
CACCACCTCCCAAATCTCCAACCCCACCTTCCTTTCTCCCTTTTTCTCCC
ACTTGACTCCTCAATTTTCTCGCTTCCTTCTCCCTTTCAGTTCAGCTCAT
TCCCAATTCACGTTCACACAATTTATCTCTCTTTCCTTCTCCCTTACATT
TTCTCCTGTTATTAAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACCTCAGGACAGAAGAATTT
GGGGGTCAGTTTTCATGAGGGCATTGCAGTCTTGGAGGAGTAATAGTCAG
AGACTTGACAGTCATGGGGTGGGAACACTGCAAAACATGAGGAAATGACA
CGCAGTTCCTACTTTGAAGTATAGGTGTTAGACCAAAGAAGGGTCCTGAG
AACTTGGTAGCTTAGCTTGTCTTGAGGTAGGAGGAAGTAGCAGAGATATG
TAACTTTCCAGGAAGTGAGTGACTTGAAAATCTTAGGGTAAGGAAGTCAC
TTGAACAAGTTAATGCCGATTCACAGGTAGACGTCTCCAGACATGGCGTC
ACCAGTTTGTTCCCTCATGCTTGCTTCTCTGTTGCTTTCTCCTGCCACAT
TGATGGCATAGACACCAGGGCCCAGGTTCCTAAGGCAGAGTCTAGAGTAG
CAGTTCTCAACCTTCCTGATGTTGTGTCCCTTTAACACAGCTCTTCATGT
TGTGATAACTCCAACCATACAATTATTTTCATTGCTACTTCACAACTGAA
GCATTGCTACTGTTATGAATCATAATGTAAATCTCTGATACGCAGGATGT
CTGATATGGGACCTCTGTGAAAAAGTCATTTGATGCTCCCAACGGTTTAT
CACGACCCACAGGTTGATGACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_o03.b1 MSMg01no209_o03.b1 CHROMAT_FILE:
MSMg01no209_o03.b1 PHD_FILE: MSMg01no209_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:11 2005
         (367 letters)



>mm_chr18_47337434_47338200
          Length = 767

 Score =  656 bits (339), Expect = 0.0
 Identities = 357/363 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacagtccacgtgaaccattatttatttagccatccctttcgatgaatactagg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaattccacagtccaggtgaaccattatttatttagccatccctttcgatgaatactagg 592

                                                                       
Query: 65  gtttattctaccctttggctgttgcagcaacatgggaatcagccttttacataacactga 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gtttattctaatctttggctgttgcagcaacatgggaatcagccttttacataacactga 532

                                                                       
Query: 125 atgcatgcacaagcaatgggactcaatgtctaggagtaaattatttccaaatatgatcac 184
           ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 531 atgcatgcacaagcaatgggattctatgtctaggagtaaattatttccaaatatgatcac 472

                                                                       
Query: 185 acatgaccacaccccctttacttggactcaaacctcacccatagaccatgtaataggaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 acatgaccacaccccctttacttggactcaaacctcacccatagaccatgtaataggaaa 412

                                                                       
Query: 245 caaaactccttcaaatgcatatccctgatacttctggaggtttgtgcatactggttgttg 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 411 caaaactccttcaaatgcatatccctgatacttctggaggtctgtgcatactggttgttg 352

                                                                       
Query: 305 agccagagatatggtggacactcatttctgggatcttctttgggatatgctgggtctgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 agccagagatatggtggacactcatttctgggatcttctttgggatatgctgggtctgta 292

              
Query: 365 gtt 367
           |||
Sbjct: 291 gtt 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no209_o03.g1 MSMg01no209_o03.g1 CHROMAT_FILE:
MSMg01no209_o03.g1 PHD_FILE: MSMg01no209_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:11 2005
         (518 letters)



>mm_chr18_47318482_47319399
          Length = 918

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacctcaggacagaagaatttgggggtcagttttcatgagggcattgcagtcttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagacctcaggacagaagaatttgggggtcagttttcatgagggcattgcagtcttgga 260

                                                                       
Query: 61  ggagtaatagtcagagacttgacagtcatggggtgggaacactgcaaaacatgaggaaat 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtaatagtcagagactcgacagtcatggggtgggaacactgcaaaacatgaggaaat 320

                                                                       
Query: 121 gacacgcagttcctactttgaagtataggtgttagaccaaagaagggtcctgagaacttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacgcagttcctactttgaagtataggtgttagaccaaagaagggtcctgagaacttg 380

                                                                       
Query: 181 gtagcttagcttgtcttgaggtaggaggaagtagcagagatatgtaactttccaggaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagcttagcttgtcttgaggtaggaggaagtagcagagatatgtaactttccaggaagt 440

                                                                       
Query: 241 gagtgacttgaaaatcttagggtaaggaagtcacttgaacaagttaatgccgattcacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgacttgaaaatcttagggtaaggaagtcacttgaacaagttaatgccgattcacag 500

                                                                       
Query: 301 gtagacgtctccagacatggcgtcaccagtttgttccctcatgcttgcttctctgttgct 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 gtagacgtctccagacatggcgtcaccagtttgttcgctcatgcttgcttctctgttgct 560

                                                                       
Query: 361 ttctcctgccacattgatggcatagacaccagggcccaggttcctaaggcagagtctaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctcctgccacattgatggcatagacaccagggcccaggttcctaaggcagagtctaga 620

                                                                       
Query: 421 gtagcagttctcaaccttcctgatgttgtgtccctttaacacagctcttcatgttgtgat 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagcagttctcaaccttcctgatgctgtgtccctttaacacagctcttcatgttgtgat 680

                                                 
Query: 481 aactccaaccatacaattattttcattgctacttcaca 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactccaaccatacaattattttcattgctacttcaca 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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