BAC Information

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BAC

Clone NameMSMg01-212G13
Chromosome18 (Build37)
Map Location 88,626,481 - 88,626,766
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212G13.T7 (MSMg01no212_g13.b1)MSMg01-212G13.TJ (MSMg01no212_g13.g1)
ACCAG393777
length713715
length of high quality
(start - end)
---286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no212_g13.b1 PHD_FILE: MSMg01no212_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:10 2005CHROMAT_FILE: MSMg01no212_g13.g1 PHD_FILE: MSMg01no212_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAATC
AACTTTTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXX
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGATGGACAAATGTATACAGAGCCCACA
GGACTATAAATAATATGACTAGGAGGGCAGAGGAAATAAACACACACACC
TCTGGAGAAACACAAACAGCAACCCCAACACATCTCAAATCCAAAGCACA
CTATAAATGTTCAAAAAGCAATGATGCTGAATCATAAAGACTCAATTTAA
TATTTTAACAGTGAACTTGGATGCTTAGTGACTCTCACTCATGACACGAG
ACAGAAAATGGAAATTGAGGTTTCAGGCATTAAAGGACACTAAAATTAAT
AATTACTATCTACTACACCACCCCTCTTAATAATTTGCATCCAAACAAGA
TTGGAGAACTCACCCCGCGGTGTCAGGATAAAGTCGATAAGTTTCACTTA
AAAAATATAAGATATCTATTAAAAAAACTATTGTTGGAAAGTAGGTTAGA
GGAAGTTGAAGAAGGGAACCATGGTCTCAAATTAAGAATAGAAGATTGGC
TGGTGCTGTCCACAGCTGCTTCTGTGAGGTGATAAAGATATGACATCATA
ATTGCCTAGATACTACTAAAATATTTACTTAGTTTAAACTATTCTTCTGT
TAAGAGAAAGGCAATACAACCAAGTCAATACAGTCAAAACAGTATTACAT
TTTGTAGTGAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_g13.g1 MSMg01no212_g13.g1 CHROMAT_FILE:
MSMg01no212_g13.g1 PHD_FILE: MSMg01no212_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:10 2005
         (286 letters)



>mm_chr18_88626281_88626966
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatggacaaatgtatacagagcccacaggactataaataatatgactaggagggcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agatggacaaatgtatacagagcccacaggactataaataatatgactaggagggcagag 427

                                                                       
Query: 61  gaaataaacacacacacctctggagaaacacaaacagcaaccccaacacatctcaaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaaataaacacacacacctctggagaaacacaaacagcaaccccaacacatctcaaatcc 367

                                                                       
Query: 121 aaagcacactataaatgttcaaaaagcaatgatgctgaatcataaagactcaatttaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaagcacactataaatgttcaaaaagcaatgatgctgaatcataaagactcaatttaata 307

                                                                       
Query: 181 ttttaacagtgaacttggatgcttagtgactctcactcatgacacgagacagaaaatgga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 306 ttttaacagtgaacttggatgcttagtgactctcactcatgacacgagacggaaaatgga 247

                                                         
Query: 241 aattgaggtttcaggcattaaaggacactaaaattaataattacta 286
           |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 246 aattgaggtttcgggcattaaaggacactaaaattaataattacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)