BAC Information

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BAC

Clone NameMSMg01-213H17
Chromosome18 (Build37)
Map Location 46,797,325 - 46,797,571
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a
Downstream geneLOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213H17.T7 (MSMg01no213_h17.b1)MSMg01-213H17.TJ (MSMg01no213_h17.g1)
ACCAG394460AG394461
length736738
length of high quality
(start - end)
243 (69 - 311)246 (66 - 311)
definitionCHROMAT_FILE: MSMg01no213_h17.b1 PHD_FILE: MSMg01no213_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:31 2005CHROMAT_FILE: MSMg01no213_h17.g1 PHD_FILE: MSMg01no213_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
AGATCTTACTAAAAAAAGATCGGCTCTAATGCATCCCACTGAGCATCTAA
AATAGTGATTCTTAACCCCCCTAGTGCTGTGACATTTAATTCAGTTCCTC
ATGCTGACCCCCAACCACATTTTTATTTTTATTTTTATTGCTACTTCATA
ACTGTAATTGTAATGTGCCATTATGAGTTGTAATGAAAATATCTGATATA
CCTATGGTCTTAGGTGACCCCTGTGAAAGGGTCATTTAACCTTCCCCCAC
ACCCCACAATGTATATTGNATTCACTGACTCTGAGCCTCCTGCTCCATCT
TATGTTCTTTCTACACCCACCCAGCATGCTTTGTTGTTAACTCTTAAGAC
TCTTAAGACTTCACCACATTCTGCCCTCAAGTCCTATCTGCTTCTGGCTT
CTTTCTCCTGTTGTTGCAACAATACCTGTAGAAAGAAAATCTTGTGTATT
GCATGGATACATCACCTATTAGTTAAAAAGCCTATGGCCCATGGCTTAGG
CAGGAAATAGAGATGGGACTCCCGGGAGGAAAAAGAATTCTGGGATAGAG
CTAGTTGCCAGATTGGCCCAGGAAGATGTAAAGACATGTGTGCCTGGTAT
CTGAGCACAGGTAACCAGCTATGTGGCAGAATGTAATTTAAAACAAATGG
GCTATTTTTAGTTATGCTCTAGTCTATATGGTCTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTCTCATGCTTCAGCCGAGCACCTTCCTCTGCTG
GGCTTGATCAGCAAACCTTTTCCAAGTGGTTTGGATGTGTTAAGTTCTTG
CTTAGGCCTAATCCAGGGATTTCCACCACCGACTGGCACTGTCCTTTAAG
GTTTGAGACCTTTATGTGTGAAGCATAACCCTGAGTCAAGTCTGCTGTTC
TCGGAAATGGAGGGAACTGAGGCATCACCACGGGTGATGTGTTCAGGGCA
GGTGTTGTGGAAGCTAAGCCTTGGTATTTACTGCCCTGAATAGCTTGTTT
GATTATTTTTTGAATTTCCCTCCCCCCCAGAACAATATCTCTTGTCTCTA
AAATACTACACACCCCCACTTGAAATAATGTGATTGCTTCCTGTTGGTTT
TTGTGAAAATAATCATTTTGTATCAAGGAAACCCATAGTTACCTACTATT
TTGTGTTTTGATTGCAAGGGAGGCGAAGAATATTGGAAGAGAACTTGCTG
ATTAGAAGTGTGTGAACTCGGTAGTGCGCCGCTTTTACTATAGATTAGAG
CATAGTGCCGCATACGGTTTTCTTTGACCTATTTATCTCTCGCCCATCCA
TTTTGTTCCCGCGATCATACCACGCTTTTGACCTTTACAGAAACAGTGTA
TCCTGTCCCCCTCTTCCTAAGCCCCCATTTCTAATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_h17.g1 MSMg01no213_h17.g1 CHROMAT_FILE:
MSMg01no213_h17.g1 PHD_FILE: MSMg01no213_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:31 2005
         (246 letters)



>mm_chr18_46797125_46797771
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%), Gaps = 1/247 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcatgcttcagccgagcaccttcctctgctgggcttgatcagcaaaccttttccaa 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 447 tctcccatgcttcagccgagcaccttcctctgctgggcttgatcagcaaatgttttccaa 388

                                                                       
Query: 61  gtggtt-tggatgtgttaagttcttgcttaggcctaatccagggatttccaccaccgact 119
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtggttgtggatgtgttaagttcttgcttaggcctaatccagggatttccaccaccgact 328

                                                                       
Query: 120 ggcactgtcctttaaggtttgagacctttatgtgtgaagcataaccctgagtcaagtctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggcactgtcctttaaggtttgagacctttatgtgtgaagcataaccctgagtcaagtctg 268

                                                                       
Query: 180 ctgttctcggaaatggagggaactgaggcatcaccacgggtgatgtgttcagggcaggtg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctgttctcggaaatggagggaactgaggcatcaccacgggtgatgtgttcagggcaggtg 208

                  
Query: 240 ttgtgga 246
           |||||||
Sbjct: 207 ttgtgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)