Query= MSMg01no213_m15.b1 MSMg01no213_m15.b1 CHROMAT_FILE:
MSMg01no213_m15.b1 PHD_FILE: MSMg01no213_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:55 2005
(308 letters)
>mm_chr18_74655240_74655947
Length = 708
Score = 572 bits (296), Expect = e-168
Identities = 302/304 (99%)
Strand = Plus / Minus
Query: 5 gaattccattcctcaacaaagcggtctgtcaatgcctctcgaagctcactcagctttatc 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattccactcctcaacaaagcggtctgtcaatgcctctcgaagctcactcagctttatc 449
Query: 65 tttccatgaaaccacccttttgaggttgagtgttggaattaagtgtgcaccagctgttac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttccatgaaaccacccttttgaggttgagtgttggaattaagtgtgcaccagctgttac 389
Query: 125 aaagacgttggactgctccatcaggtggcaaacattttcctctaagaaaagatcccttcg 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaagatgttggactgctccatcaggtggcaaacattttcctctaagaaaagatcccttcg 329
Query: 185 cttttcctcctaagtctacatgtcaaaagacagcagcctggtgtgtctatagtctgcctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttttcctcctaagtctacatgtcaaaagacagcagcctggtgtgtctatagtctgcctc 269
Query: 245 atttctaagaccatctacctctcactccctgtgttcttaaagaaactagaacagccacca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atttctaagaccatctacctctcactccctgtgttcttaaagaaactagaacagccacca 209
Query: 305 caca 308
||||
Sbjct: 208 caca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space: 209001
Effective search space used: 209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_m15.g1 MSMg01no213_m15.g1 CHROMAT_FILE:
MSMg01no213_m15.g1 PHD_FILE: MSMg01no213_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:55 2005
(178 letters)
>mm_chr18_74511471_74512042
Length = 572
Score = 290 bits (150), Expect = 3e-83
Identities = 169/178 (94%), Gaps = 6/178 (3%)
Strand = Plus / Plus
Query: 1 catacttttttatccatatatatccaaaggagaccagaaactattctcaaatgttgtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 catacttttttatccatatatatccaaaggagaccagaaactattctcaaa---tgtgta 257
Query: 61 aaactcattttataacttcaatagttttttttttcctttctgaattaaagccccccgtgt 120
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 258 aaactcattttataacttcaata---ttttttttcctttctgaattaaagcaccccgtgt 314
Query: 121 ttgagttcccttattccatgattgtgcctctcatactaattctttttcattattacag 178
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 315 ttgtgttcccttattccatgattgtgtctctcatactaattctttttcattattacag 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 572
Length adjustment: 8
Effective length of query: 170
Effective length of database: 564
Effective search space: 95880
Effective search space used: 95880
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
