BAC Information

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BAC

Clone NameMSMg01-214E23
Chromosome18 (Build37)
Map Location 49,080,014 - 49,080,249
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214E23.T7 (MSMg01no214_e23.b1)MSMg01-214E23.TJ (MSMg01no214_e23.g1)
ACCAG395002AG395003
length711719
length of high quality
(start - end)
641 (46 - 686)239 (132 - 370)
definitionCHROMAT_FILE: MSMg01no214_e23.b1 PHD_FILE: MSMg01no214_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:35 2005CHROMAT_FILE: MSMg01no214_e23.g1 PHD_FILE: MSMg01no214_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTTTTACCGCATTTATACCTCCATATAAATATACCACATT
TTCTGTACCCATTGTTCTGTTGAACCATGTCTGGGTTCTTTCCAGCTTCT
GGCTATTATAAATACGACTGCTATGAACATAGTGGAGCATGTGTCCTTAT
TATATCTTGGAGCATTTTTGGTATATGCCCAGGACTAGTATGGCTGGGTC
CTCAGGTAATACAATGTCCAATTTTCTGAGGAACCCAAACTGATTTTCAG
AGTGGTTTTACCAGCTTGCATTCCCACCATCAATGGAGAAGTGTTCCTCT
TCCTCCACATCCTCGCCAGTATCTGCTGTCACCTGAATTTTTCATCTTAG
CCATTCTGATTGGTGTGAGGCGGAATCTCAGGGTTGTTTTCATTTGCATT
TCCCTGATGATTTAGGATGTTGAACATTTTTTTCAGGTGTTCTCTGCCAT
TCGTTATTCCTGGGGTGAGAAATCTCCGTTCAGTTCTGAGCCCCATTTTT
TAATGGGGTTATTTGAATTTATGGAGTCTACCTTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGTCTTTTTGCCTTATTGATGGTGTCTTTTGCCTTGC
AGAAGCTTTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGGTCTATGTCAACAACACTCA
GTATTATCAATAATTTTAACCTCTTACCCTTTTATAAATCATTTTCAAGG
CAAGCATAATTAACTGCATTACAAAAAACTTATGTAAACTTCAAAAAACT
GGGTTTTTTTTTTTGAACGGATGAAATCATATATTGCCTGAAGAAAAAGA
CTATCGTGAACATCAGAAAACTTTTTAACAAGTAATGTTTCCATATATAA
TATTTGCTTTGTTATTAATAATTTATTTAAAGATTAACTTGCCCTCTAGT
TAATATGTATCCCTCAGTTATCACCTCAGACACCATTGCATCTTAAGAGA
GCTCTGTGTTTATCCAACTAGGTAGTCCCTCACTTCCTTGTCTATAGCCT
GTTTATTCATTACCTCTATTTATCAGAAATGGCTAGGATTCTCAAAGTGC
AGTCCATGGTCAAGAATTATGATTTTCACCTTGGCATGTGTTAGGAAACT
ATGTCTTCAGGATCAACTCCAGACACACTATATCAGAATCAATGTTCATG
CATCTTGGGAAACTCCTGGTTAACAAACCTTCCAAGTAACTGTCACAAGC
TACCTGAAGAGTCTGGNGCCCCTGTGTTTACTGTAGAAGTTAAGCTGAGT
AATGAAAGAAAACTGTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_e23.g1 MSMg01no214_e23.g1 CHROMAT_FILE:
MSMg01no214_e23.g1 PHD_FILE: MSMg01no214_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:35 2005
         (239 letters)



>mm_chr18_49079814_49080449
          Length = 636

 Score =  406 bits (210), Expect = e-118
 Identities = 232/240 (96%), Gaps = 5/240 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttataaatcattttcaaggcaagcataattaactgcattacaaaaaacttatgtaaactt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttataaatcattttcaaggcaagcataattaactgcattacaaaaa-cttatgtaaactt 259

                                                                       
Query: 61  caaaaaactgggtttttttttttgaacggatgaaatcatatattgcctgaagaaaaagac 120
           |||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 260 caaaaaactggggtttttttt--gaacggatgaaatcatatattgcctgaagaaaaagac 317

                                                                       
Query: 121 tatcgtgaacatcagaaaactttttaacaagtaatgtttccatatataatatttgctttg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tatcgtaaacatcagaaaactttttaacaagtaatgtttccatatataatatttgctttg 377

                                                                       
Query: 181 ttattaataatttatttaaagattaact-tgccctctagttaatatgtatccctcagtta 239
           |||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct: 378 ttattaataatttatttaaatattaa-tgtgccctctagttaatatgtatccctcagtta 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 636
Length adjustment: 9
Effective length of query: 230
Effective length of database: 627
Effective search space:   144210
Effective search space used:   144210
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)