BAC Information

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BAC

Clone NameMSMg01-216O09
Chromosome18 (Build37)
Map Location 58,340,647 - 58,340,961
singlet/doubletsinglet
Overlap geneFbn2
Upstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
Downstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216O09.T7 (MSMg01no216_o09.b1)MSMg01-216O09.TJ (MSMg01no216_o09.g1)
ACCAG396610AG396611
length735908
length of high quality
(start - end)
320 (45 - 364)---
definitionCHROMAT_FILE: MSMg01no216_o09.b1 PHD_FILE: MSMg01no216_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:06 2005CHROMAT_FILE: MSMg01no216_o09.g1 PHD_FILE: MSMg01no216_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGCCATCGTGGCCTTCTGGGATCTCAACTGCCTTACTGCATCTCA
GGGAGTCTGTGAGGCTGTTCCTGCGTCCTTTCTAACTGTAACACAGCATG
GGAGACTCCAGCAGCTAACTGGAAAGTCGGATGGCTCATCCTGTCCATTT
TTCTTTCTCTCATCGATAGCCGGGATTTGCTGCATAGTATGTTCATTGCT
TTTTGAATTCCTCACAATCAAGCATCCAAGGAAATCAGCCAAAGAAGAAA
AGGATTATTTTGACTCAGGGTTTCAATTGGAGGTCGCTGGGTTTCACTGT
TTCTGTGTCTGTGTTTTTGCAACACCCCACAGCACGGAGAGGAACAAGGC
CACCCACCTTACGGCCACTACGAAGAAGAGAAAGAGCACCTCCTCCAAAC
CCATTAATGGAGTCACATGGAGGAAGCTGGAGAATGCATCAGCATTCTAT
TGTCTGCTGCCTAGTGAAACACTGCTTTACTGAGGATCAAACTGTCATGG
GTGCTTAGGGACATTTATGATCCAATCCATAAAGCTAGGTGTCCAATATT
TTTCAGAATTGTCTTAAACATTTTACTTTTCCTTTTTAATCAGGAGGATC
AATATGGTCTTCCACTGGTTTATCCTGGTCTCAGATAAAAGTCTCAACTT
TCTTTTAAGATGAGGAATTCTGATCATTTTAGGAC
TTTTTTTCTTCTTNTTATCCTTCGAGGGAGCGACGTCTTNTTTAGAAATA
GGAAGAGGGGAGGGGGGGGGTGTTTCNTATTCGCNGGGNNGGNNNNGGTT
TACAACAGAAGGGGGGNGGNGGGGGGGGNNGGNNNGGGNGGGGGGGGGGT
TTTTTGNCCGGGNGGNGGGGGNGGGGNNGGGGGGGGGGGGGGGGGGGGGN
NGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGNNNGGGNNGGGGGGGN
GGGGGGGGGGGNNGGGNGGGGGGGGGGGGGGGGGNGGGGTTTTTTTTTGT
GGTGGGGGGGTGGGGGGGGGGGTGGTGTGTTGTNGGGNGGNGNNGGGGNN
GGGGGGGGGGTTTTGAATAGNGTTTNNNNGGNGGGNGGGGGGGGNNGNGG
GGGGGGGTTTTTTTTTTTTTCGCCCCGGGGGGGGGGGGGTGTGGGGGGTG
GTGTGTGGGGTGGGTGGGGGGGGGCCCGGTAAAAAAAAAAAAAAATAAAT
GTGGTGGTGGGGTGGGGTATAATGTAAGTGTGAGTAAAGTTTAAGGATTG
AAGGTGAGAGATGAGTGGAAGATGTAGTGTGAAAGAGGAAATAATGTGTG
TGATTTTGATGTGGGGGAGATGTGTGAATATAGTAAGGTGTGAAGGAGGA
TAATAAAATAAATAGAAAAGGAAATATGTTAAGGGTTAGAGGGTAGTGTA
TTGAGTTATTAGAGTATTATATATTGGAGCTGTGTGAGTAGAAAAAAGAA
GTAAAGAAGAGGATAAGGGTAGGAGAGTGTTATATATTTTTGTTTTTGTT
TTTTTGTAGGGGAGGAGATAGAAATAGAGTTGAGATAGGATGGGTATGTG
TATAATATGTATGAAATTGACAATAATTAATAGATATGGAGAGAATAATG
GAGAGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_o09.b1 MSMg01no216_o09.b1 CHROMAT_FILE:
MSMg01no216_o09.b1 PHD_FILE: MSMg01no216_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:06 2005
         (320 letters)



>mm_chr18_58340443_58341162
          Length = 720

 Score =  540 bits (279), Expect = e-158
 Identities = 306/315 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagccatcgtggccttctgggatctcaactgccttactgcatctcagggagtct 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagccatcgtggtcttctgggatctcaactgccttactgcatctcagggagtct 264

                                                                       
Query: 65  gtgaggctgttcctgcgtcctttctaactgtaacacagcatgggagactccagcagctaa 124
           |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgaggctgggcctgtgtcctttctaactgtaacacagcatgggagactccagcagctaa 324

                                                                       
Query: 125 ctggaaagtcggatggctcatcctgtccatttttctttctctcatcgatagccgggattt 184
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 325 ctggaaagtcggatggctcatcctgtccattttcctttctctcatcaatagccgggattt 384

                                                                       
Query: 185 gctgcatagtatgttcattgctttttgaattcctcacaatcaagcatccaaggaaatcag 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 gctgcatagtatgttcattgctttttgaattcctcgcaatcaagcatccaaggaaatcag 444

                                                                       
Query: 245 ccaaagaagaaaaggattattttgactcagggtttcaattggaggtcgctgggtttcact 304
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaaagaagaaaagtcttattttgactcagggtttcaattggaggtcgctgggtttcact 504

                          
Query: 305 gtttctgtgtctgtg 319
           |||||||||||||||
Sbjct: 505 gtttctgtgtctgtg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)