BAC Information

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BAC

Clone NameMSMg01-218L21
Chromosome18 (Build37)
Map Location 44,969,263 - 44,969,578
singlet/doubletsinglet
Overlap genenone
Upstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883
Downstream geneYthdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218L21.T7 (MSMg01no218_l21.b1)MSMg01-218L21.TJ (MSMg01no218_l21.g1)
ACCAG397800AG397801
length718720
length of high quality
(start - end)
323 (45 - 367)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no218_l21.b1 PHD_FILE: MSMg01no218_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:51 2005CHROMAT_FILE: MSMg01no218_l21.g1 PHD_FILE: MSMg01no218_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTATTGTGAATGAACACGGGCTCAGCTACGATAAGGCTAATTCAC
TACTGTGAAACAGGGGGTTAGGTCAGTATAATGCTAGTGAAGGGTACTAG
AAGAGTCTGCCGTGCTGTCACTGCACAACCCAAATCTTATCCTGTCCGGG
ATAAAGATGCCTGATGATAAATTCATGGACCATCTCAGCTACTGAAATGG
GGATGGTTCTGCATCCCTTTGACAGGGTAGATGCTCCCTGCTAGGGTCAC
CAATTCAGGGAATCTTCAGTTAGCCTATGTCTTTCCTGGTGGGGAAGACT
ATGAAGAGAACATTGTCATTATTAACCNNNACCTNTTCTCTCATTGACAT
TCACACACACACACACACACACACACACACACACACAAAATGCTTCTCTC
TTTTCTTTCTCTTTCCTCCAGACATAAGGTTGCCAGCCCACTCCAGTTTA
GGATAAGGGCGAGGTAGAGGACCAGAGACAGTATAGTCAAGTGAAGATTA
TTATGCAGGAGGGAACTTATATGAACTGATTCCTACTTTCCCATCCAAGA
GCTACTGCTTGTTCTAAGCGACAGAGCTTAGATTTCATGGACCACTGTAC
CTAGATGAATTACCATTTCCCTCACATTCTGTTGCAAATAGAGGTGGCAA
AGAGTTGTAATTTGAAAA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTATTCAGTAAC
ATTTAAATTCACTTCTAGTAGAGACACGTGAAACTAATTAGACATCACAA
AGAACAGAGCTAGAAAAGCTCTGGGCTAGTCTACATGGTGATTACTTAGG
ACAATAGCCGAGTCTCACCCAAACAAGGGAATACACAATGGCCTAGCGAA
TAGGTGGGTTAACCATGAAAGAGTTAGTGGAAGGGAAGTCCCCTGGGACA
GGTTTCTTCACTAGGCCCAAAGGAACAGTATAATCAGGTATTTACTAAGA
ACCCCTGGTGGTGGTTTTAATANTCANTAGCCTNAACCTGGNTCCATTCT
AAGTGGTAAACGCAGACTGGTCCCCGCCATAAATAAAGAAATGCATTCCT
TTTGGTTTGTGTCACTGTAATTTAGAGGATGTGTCTGCCTGGCTTTTCAA
TGTTTTTTTTTTTTTCTTCTGAATAAAAAAGTCCAGTTTTCATTTGGACA
TTACATTCAGATTCAACACACTCTCTCATGTCGCGTCTCTTTGTCACCCA
CTCCCGCCGACTCTATGCCCATCTATCTGAAACTTTGATTCACACGGTAT
TGAGGAGGACCCACTGAGCCCGGGTCCGTGGCATTGCGGTTCAATCCTTT
TGAGGTTCGGTAAGTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_l21.b1 MSMg01no218_l21.b1 CHROMAT_FILE:
MSMg01no218_l21.b1 PHD_FILE: MSMg01no218_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:51 2005
         (323 letters)



>mm_chr18_44969059_44969780
          Length = 722

 Score =  551 bits (285), Expect = e-161
 Identities = 309/317 (97%), Gaps = 1/317 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactattgtgaatgaacacgggctcagctacgataaggctaattcactactgtga 64
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 205 gaattcactattgtgaatgaacacgggctcagccacgataaggctagttcactactgtga 264

                                                                       
Query: 65  aacagggggttaggtcagtataatgctagtgaagggtactagaagagtctgccgtgctgt 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 aacagggggttaggtcagtataatgctagtgaagagtactagaagagtctgccgtgctgt 324

                                                                       
Query: 125 cactgcacaacccaaatcttatcctgtccgggataaagatgcctgatgataaattcatgg 184
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 cactgcacaacccaaatcctatcctgtccgggataaagatgcttgatgataaattcatgg 384

                                                                       
Query: 185 accatctcagctactgaaatggggatggttctgcatccctttgacagggtagatgctccc 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accatctcagctactgaa-tggggatggttctgcatccctttgacagggtagatgctccc 443

                                                                       
Query: 245 tgctagggtcaccaattcagggaatcttcagttagcctatgtctttcctggtggggaaga 304
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 444 tgctagggtcaccaattcagggaatcttcagttagccaacgtctttcctggtggggaaga 503

                            
Query: 305 ctatgaagagaacattg 321
           |||||||||||||||||
Sbjct: 504 ctatgaagagaacattg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)