BAC Information

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BAC

Clone NameMSMg01-218M06
Chromosome18 (Build37)
Map Location 17,569,368 - 17,569,684
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218M06.T7 (MSMg01no218_m06.b1)MSMg01-218M06.TJ (MSMg01no218_m06.g1)
ACCAG397815AG397816
length765743
length of high quality
(start - end)
323 (42 - 364)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no218_m06.b1 PHD_FILE: MSMg01no218_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:53 2005CHROMAT_FILE: MSMg01no218_m06.g1 PHD_FILE: MSMg01no218_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTCTTCTCCCAGATGTTTCATCTCCCATTTCCTGCATAAGCCATAGGC
CCTGGGCCTTTTGCTTGACAAGTGATGCATCCATACAATACATAAGATAT
TCTCTCTATAATTAGCCTGTGACACAGCTGCCACAGTGTATGTATGAGAA
GGGTACATGTAAATTATAGCAGCAATGTCTCTATTTTATTCCAAAATACT
TAATGTCTTCACATTCACTATTTCACCTCCAAAGTATCAATAACATCTAT
GTTGTTTAGTTGTGAGGATTGATTATAACTTGTATGTCCAATGATATTGC
TGTCACTTTGTCTTTTTGTCCCCCNNACGGACCATATACCAAGTCATTTT
TTTCAATAGCCATCCCCACCTCTACAAAATACAAAAAATTCTCCTTACAT
AATTGTTCTCTAGGGGTACCTACTGCTTTTGTGCTGACATCTAAGGCATA
ATATTTATTTGTAACTTCTACTTTGCTCTCAGTTTGTTATATATTTTCAC
CATGGTAAGGTTTTTATAGTTTCTATCTTTTCTTGACTATTGTGGTGCCT
TGTTTTTCTTTCTCTTTGTTATTCTTCTTCCTCCACCAATTTTGTTACAA
ATAAGAGACCTGAATATACCACTCATTTTTGGGTCGTCGCCTGTCAGGTT
TTGTTCCTTATCTCCCTCTCTTGCCCACCTATTATTACTTTTTTTTACCT
CTATTTTCATTTTTT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGATGAAGACCGAATGGCTGAGA
AGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGGGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACACCCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTAGTACTGGAGGATTCCGC
AATACCTCTCTTTTTTTTATCTCCAGCAGCACCCCCAACCCGTAAGAAGG
ACACATGCTCCACTATACCCCCACCAAACTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAATAGAGGAATGGATAAAAAAAATGTG
GTATATTTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTA
TGACATTCCTAGGCCAATGTTTGGACCTGGAAAGGATTCATCCTGAGTGA
GGTAACCCAATCACAAAAGAACTCCCATGATATGTCCTCCACTGAAAAGT
GGATATTATCCCCAAATACTTTATTATACCCAACGATATAATGATACATT
TTTGTAACTAAACATGCAAACTGATAGACGCACTTAATGGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_m06.b1 MSMg01no218_m06.b1 CHROMAT_FILE:
MSMg01no218_m06.b1 PHD_FILE: MSMg01no218_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:53 2005
         (323 letters)



>mm_chr18_17569046_17569768
          Length = 723

 Score =  559 bits (289), Expect = e-164
 Identities = 310/317 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcttctcccagatgtttcatctcccatttcctgcataagccataggccctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaattctttcttctcccagatgtttcatctcccatttcctgcataagccataggccctgg 580

                                                                       
Query: 65  gccttttgcttgacaagtgatgcatccatacaatacataagatattctctctataattag 124
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||
Sbjct: 579 gccttttgcttgacaagtgatgcatccatacgatacataagatattctctctataagaag 520

                                                                       
Query: 125 cctgtgacacagctgccacagtgtatgtatgagaagggtacatgtaaattatagcagcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cctgtgacacagctgccacagtgtatgtatgagaagggtacatgtaaattatagcagcaa 460

                                                                       
Query: 185 tgtctctattttattccaaaatacttaatgtcttcacattcactatttcacctccaaagt 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 459 tgtctctattttattccaaaatacttaatgtctccacattcactatttcacctccaaagt 400

                                                                       
Query: 245 atcaataacatctatgttgtttagttgtgaggattgattataacttgtatgtccaatgat 304
           ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 399 atcaataacatctatattgttttgttgtgaggattgaatataacttgtatgtccaatgat 340

                            
Query: 305 attgctgtcactttgtc 321
           |||||||||||||||||
Sbjct: 339 attgctgtcactttgtc 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)