BAC Information

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BAC

Clone NameMSMg01-231M17
Chromosome18 (Build37)
Map Location 4,147,074 - 4,147,386
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666
Downstream geneLyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231M17.T7 (MSMg01no231_m17.b1)MSMg01-231M17.TJ (MSMg01no231_m17.g1)
ACCAG398503AG398504
length709707
length of high quality
(start - end)
317 (45 - 361)322 (382 - 703)
definitionCHROMAT_FILE: MSMg01no231_m17.b1 PHD_FILE: MSMg01no231_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:09 2005CHROMAT_FILE: MSMg01no231_m17.g1 PHD_FILE: MSMg01no231_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTCATTTCAGTTCCTGACACAGGACATGGGACCAAGTGGTAAATGC
AGAAGCACCATCCATACCATGACACAGAAACAAACCAATTAGTGCAGAGT
CACGTTGAATTCATGCCTTTGGGTATAAATTAATTGTATATATAGGCTGA
GGTGTCTTGTTATAATGTAAGTCCTTAATAATATAGAACAAGAAAAGACT
CAGTATGTACACTGTGGAGGGAGACTCAGTATGTACACCGTGGAGGCAGA
CTCAGTATGTACACCGTGTTAGGCAGACTCAGTATGTACACCGTGGAGGC
AGACTCAGTATGTACACTGCCCCACCCCCACTCAGTATGTACACTGTGGA
GGCAGACTCAGTATGCACACCGAGCAGGCAGATTCAGTATGTACACTGCG
GAGGCAGACTCAGTATGTACACTGTGGAGGCAGACTCAGTATGTACACTG
TGGAGGCAGACTCAGTATGTACACTGTGGAGGCAGACTCAGTATGTACAC
TGTGGAGGCAGACTCAGTATGTACACTGTGGAGGCAAAGGGTTCAGACTG
GGATTGCTTTCCTTATGTAGGATCTTAAAATGTTATTTCAGACATTTAAA
AATAAAGTCATCACTTGTGCTGTGTCTCCAAAGTTAGGAATATTCCCTGG
GGCCAATGG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAACTTCTTCATATTTTAAGGTG
AGGAAGGCAAAGGAGAGGAAAGACACACTCATTCTTACCTGAGTGTGAGC
CAGCACCGGGACTAGGAGACATGGCAAGGGAAGCCGACCCACCCACAGGG
GAGATAAGCCCCTACCACCATGCTCTACTCAGAACCTCAACCCACAGGTA
CCTACTCACACCATTCAGAGGCTTGACACCTTGCTGCAGACCCTCTGGGT
CCCTTTGTCTGCGTGGAATGGGTCTGTGGGTGCAGATGGGCAAGGAGTTG
GTGAGTGATTTTATTGACCCCCCCGCCCCATTGTGTAGAATCTGAATGTA
ATTTGTCAAATTGAGCCCCACACTTTTTATACAGAAGAAAATAGGGAAGT
TACGTGACATATCGGCAAGGTACAAATGAGGTTACCTGATGCTTAATGAC
TCTTACACAAAACAGAGGAATGTAAACACAAAGACTGGAAGGAACTGGGC
AATAAAACAACTGAGACAAAGTCAGCCCTATCTAAGGTTAGCTATAGCCT
TAGAAGCCAGGTGTGAGGTCTTTACACTCCTAGGGCAAGGGCTTTCACAC
CCAAGTCATGGTTCTAGTTAGGGAGTTCCGCTCTAGCTAACCATCTCATG
AATAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_m17.b1 MSMg01no231_m17.b1 CHROMAT_FILE:
MSMg01no231_m17.b1 PHD_FILE: MSMg01no231_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:09 2005
         (317 letters)



>mm_chr18_4146923_4147638
          Length = 716

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctcatttcagttcctgacacaggacatgggaccaagtggtaaatgcagaagca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggaattcctcatttcagttcctgacacaggacatgggaccaagtggtaaatgcagaagca 211

                                                                       
Query: 64  ccatccataccatgacacagaaacaaaccaattagtgcagagtcacgttgaattcatgcc 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ccatccataccatggcacagaaacaaaccaattagtgcagagtcacgttgaattcatgcc 271

                                                                       
Query: 124 tttgggtataaattaattgtatatataggctgaggtgtcttgttataatgtaagtcctta 183
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttgggcataaattaattgtatatataggctgaggtgtcttgttataatgtaagtcctta 331

                                                                       
Query: 184 ataatatagaacaagaaaagactcagtatgtacactgtggagggagactcagtatgtaca 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 332 ataatatagaacaagaaaagactcagtatgtacactgtggaggcagactcagtatgtaca 391

                                                                       
Query: 244 ccgtggaggcagactcagtatgtacaccgtgttaggcagactcagtatgtacaccgtgga 303
           | ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||
Sbjct: 392 ctgtggaggcagactcagtatgtacactgtgg-aggcagactcagtatgtacaccgtgga 450

                         
Query: 304 ggcagactcagtat 317
           ||||||||||||||
Sbjct: 451 ggcagactcagtat 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)