BAC Information

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BAC

Clone NameMSMg01-232I09
Chromosome18 (Build37)
Map Location 68,025,263 - 68,025,571
singlet/doubletsinglet
Overlap genenone
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l
Downstream geneLOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232I09.T7 (MSMg01no232_i09.b1)MSMg01-232I09.TJ (MSMg01no232_i09.g1)
ACCAG399003AG399004
length730734
length of high quality
(start - end)
315 (45 - 359)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no232_i09.b1 PHD_FILE: MSMg01no232_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:02 2005CHROMAT_FILE: MSMg01no232_i09.g1 PHD_FILE: MSMg01no232_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTAGGTGGAGTAACAACCATCTGTCAGGTCTCAGAGGTGGGGCCA
GTCTAAAGTGAGCCACGACGCAGAGATGCAGACCTCACTCCTAAATCTAA
ATGCATTTCTGAGAAGTTCTTACCAAAATACTCACAAGAGGAAGGAGCCA
CCAGAATCAAGTGTTCTGGATGGACAGCCCAGCCTTCTTCAGAGGCTGCT
GTGTCCTGGGCTGGGTGGGCAGACTGTGAGAGAAAAGGAGGGCCTTGAGG
GCCTTTAACCGGTATTATTCCAACAGGACATTGCCACTTTGTTTTCCAGA
AGTTTTTTTGTCTCTCGCCCCCCCCACTTAAAAACAGAAACGTGAGAAAG
ATACATTAACACCCCCACCAAAACTAAATGTTTCACATTTTTATATCATT
GCTTTATAAAATAAAAATTATGACAGGTGTAAAAGGGTATGATATACCAC
ATGTATTTCAGTATATACAAAGTCTCCATGTTTTTTATATACTTAAAAGT
ATTTTGGACTGGAGAGATGGCTCAGCGGTTAAGAGCATTGACTGCTCTTC
CAGAGGTCCTGATTTCAAATCTCAGCTACCATATGGTGTCCCCTAAACAT
CTGTAATGATACCTGATGCCCTCTTCTGGTCTGTCTGAAGATAGCTACAG
TGTACCTACATATAATATACTTACCATTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGGTGTCCTGG
AACTCAGGGATCTCTGCCTGCCTCTGCCTCCCAAATGCTTGGATTAAAGG
GATGTCCAGTGTGCCAGGGATGCTGAAAAGTAGCTCTCCACAACTGATGG
CTCCTGGAAGAGGAACAAGATGGGAGGGACTTGGTTCTATTTAAGGGGCA
GGCCACTGAGGGTTAAACCATGCTCCATTGAGTATATAGATAATGCAAAG
TGCTGAGAGATCCCCTCATAATTTCCCCAAAGCGTAACCATGTGTGAATA
AATTTTGATTTTTTTATGCTCCGCACCCACGAGTAAGTCTTCCCTTGTTA
TTGTGTAGCCAGAACGCCCCAAAAATTACATGCCTAAGCGAACTGCTGAG
AGCACGTTTCGATTTCTGACTGTGTTAGCCTGGAAGTGCTTGTCCCAACC
TTGTTTCTGAGCATGAACGCCCGCAAGCCAACATGTTAGTTGAAGCATCA
GGCCGATTATCAGCATGATATCAAAACGCTCTGAGCTGCTCGTTCGGCTA
TGTTGTACGCCTAGTCCGTACGCAGGACTTTTCACGCCTCGCAAGGTTTC
TTCAATCTGCATTCGCTTCGAATACATATCATCAAGTCGTTTGTGCGCTC
TAATTCCTACACGCTAGTTATTAGTTAGAATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_i09.b1 MSMg01no232_i09.b1 CHROMAT_FILE:
MSMg01no232_i09.b1 PHD_FILE: MSMg01no232_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:02 2005
         (315 letters)



>mm_chr18_68025059_68025774
          Length = 716

 Score =  559 bits (289), Expect = e-164
 Identities = 304/311 (97%), Gaps = 5/311 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttaggtggagtaacaaccatctgtcaggtctcagaggtggggccagtctaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattccttaggtggagtaacaaccatctgtcaggtctcagaggtggggccagtctaaag 454

                                                                       
Query: 65  tgagccacgacgcagagatgcagacctcactcctaaatctaaatgcatttctgagaagtt 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 453 tgagccacgacgcagagatgcagacctcactcctaactctaaatgcatttctgagaagtt 394

                                                                       
Query: 125 cttaccaaaatactcacaagaggaaggagccaccagaatcaagtgttctggatggacagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttaccaaaatactcacaagaggaaggagccaccagaatcaagtgttctggatggacagc 334

                                                                       
Query: 185 ccagccttcttcagaggctgctgtgtcctgggctgggtgggcagactgtgagagaaaagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ccagccttcttcagaggctgctgtgtcctgggctgggtgggcagactgtgagagaaaagg 274

                                                                       
Query: 245 agggccttgagggcctttaaccggtatta---ttccaacaggacattgccactttgtttt 301
           ||||||||||||||||||||||||||  |    |||||||||||||||||||||||||||
Sbjct: 273 agggccttgagggcctttaaccggta--aaacatccaacaggacattgccactttgtttt 216

                      
Query: 302 ccagaagtttt 312
           |||||||||||
Sbjct: 215 ccagaagtttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space:   216342
Effective search space used:   216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)