BAC Information

Click to search

BAC

Clone NameMSMg01-232M06
Chromosome18 (Build37)
Map Location 89,125,473 - 89,125,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneRttn, Cd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232M06.T7 (MSMg01no232_m06.b1)MSMg01-232M06.TJ (MSMg01no232_m06.g1)
ACCAG399170AG399171
length733739
length of high quality
(start - end)
316 (46 - 361)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no232_m06.b1 PHD_FILE: MSMg01no232_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:20 2005CHROMAT_FILE: MSMg01no232_m06.g1 PHD_FILE: MSMg01no232_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGGAGTTGAAGCCCAGACTCTGAAAAGGGTACTTGTCCAGTAG
GGCCAGAATCTGGACTTCTGAATGCTGGCTGAGGCTACTGTCTCCTGTGT
GACTGTGGATTGAGTCCATGCTTCTGTGATTAGAAACCAGAAAACTGGAC
TCCATTCATTCTGCCCATTGTTTACTATTGCTCAAGTGAAGTAGTGCTTG
GGTAATTAATATTCACAACAGGAGGAGCAGATGGGAAGTCCACAGGAGAT
CTCTCTTCTTCCTTGAGGTCACCATCCAAACCTTTCTTTTTTTTTTCCAT
TTTTTATTATTTATTTACCCCCCCCCCCTTTCCAATGCTATACCAAAAGT
CCCCCATATCCACCCACCCCCAATACAACTGACCACCCACTCCCCCTTTT
TGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGCCCAAT
GGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATG
CAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCC
ACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTC
CTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACTGCGAGCATCCAC
TTCTGTGTTTGCTAGGCCCTGGTATAGTCTCAN
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACACAAAACCAGAGACACTAAAAC
TTATAAAGGAAAAGTAGGGAAAAGCCTCGAAGATATGGGCACAGGGGAAA
AATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCAAC
AAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACACCAT
CAATAAGACAAAAAGACCACCAACTGATTGGGAAAGGATCTTTACCTATC
CCAAATTGAATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAG
GTGGGCTCCTGTATTTATCACACCCCCCCCCCAAAAAATGGGGCTCAGAG
CTGAACAAAGAATTCTCACCCGACGAATAACGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTTCT
TTGTTCGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGC
GGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCACATATCCAGAAGATATTCAACCGGTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_m06.b1 MSMg01no232_m06.b1 CHROMAT_FILE:
MSMg01no232_m06.b1 PHD_FILE: MSMg01no232_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:20 2005
         (316 letters)



>mm_chr18_89125270_89125985
          Length = 716

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatggagttgaagcccagactctgaaaagggtacttgtccagtagggccagaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggaattccatggagttgaagcccagactctgaaaagggtacttgtccagtagggccagaa 433

                                                                       
Query: 64  tctggacttctgaatgctggctgaggctactgtctcctgtgtgactgtggattgagtcca 123
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 432 tctggacttctgaatgctggccgaggctactgtctcctgtgtaactgtggattgagtcca 373

                                                                       
Query: 124 tgcttctgtgattagaaaccagaaaactggactccattcattctgcccattgtttactat 183
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 372 tgcttctgtgattagaaaccagaaaactggagtccattcattctgcccattgtttactat 313

                                                                       
Query: 184 tgctcaagtgaagtagtgcttgggtaattaatattcacaacaggaggagcagatgggaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgctcaagtgaagtagtgcttgggtaattaatattcacaacaggaggagcagatgggaag 253

                                                            
Query: 244 tccacaggagatctctcttcttccttgaggtcaccatccaaacctttct 292
           |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 252 tccacaggagatctctcttcttccttgaggccaccatccaaacctttct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)