Query= MSMg01no233_a12.b1 MSMg01no233_a12.b1 CHROMAT_FILE:
MSMg01no233_a12.b1 PHD_FILE: MSMg01no233_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:40 2005
(320 letters)
>mm_chr18_86563640_86564359
Length = 720
Score = 549 bits (284), Expect = e-161
Identities = 310/324 (95%), Gaps = 9/324 (2%)
Strand = Plus / Minus
Query: 5 gaattccccactgcatctcagtggagggtgaaaggcgtggaagggggaggggccatcatg 64
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 589 gaattccccactgcatctcagtggagggtgaaaggcgtggaagagggaggggccatcatg 530
Query: 65 c---------aaaaaaaaaaatgcccctttgagttagggttttcactttttaaaggttag 115
| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 529 caaaaaaaaaaaaaaaaaaaatgcccctttgagttggggttttcactttttaaaggttag 470
Query: 116 aaatgactgtctcccgtccctccaactggagctttcgagtcccctctcttctaaagggtg 175
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aaatgactgtcttccgtccctccaactggagctttcgagtcccctctcttctaaagggtg 410
Query: 176 aataaatacttcaccctctagccagctggtctaagagcgaaagcccaggcgctggaagaa 235
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 409 aataaatacttcaccctctagccagctggtctaagagcgaaagcccgggcgctggaagaa 350
Query: 236 aaaggaaagcagcggtaaaagtttcacgtttaatcactagaggagattcgctggagaatc 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aaaggaaagcagcggtaaaagtttcacgtttaatcactagaggagattcgctggagaatc 290
Query: 296 accccaaactgctactgcaaatac 319
||||||||||||||||| ||||||
Sbjct: 289 accccaaactgctactgtaaatac 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_a12.g1 MSMg01no233_a12.g1 CHROMAT_FILE:
MSMg01no233_a12.g1 PHD_FILE: MSMg01no233_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:40 2005
(287 letters)
>mm_chr18_86444181_86444867
Length = 687
Score = 476 bits (246), Expect = e-139
Identities = 276/286 (96%)
Strand = Plus / Plus
Query: 1 ggcaagaactgcccactttttcacaaagagagaaatgtttgttctcttaaatgtatgtgt 60
||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 201 ggcaagaactgcccactttttcataaagagagaaatgtttgttttctcaaatgtatgtgt 260
Query: 61 atatagtggagattgtatattgtatgtaggcaagagtatgtaaggtcatcaggcttacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatagtggagattgtatattgtatgtaggcaagagtatgtaaggtcatcaggcttacac 320
Query: 121 aaaaagaacattgtccactaaacaatccctcaacattgaaatctgggagtaaaagaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaagaacattgtccactaaacaatccctcaacattgaaatctgggagtaaaagaaaat 380
Query: 181 gaagttatttagtgaggcatcttattttccaagtcaaatgaaaagaaagaaagaaagaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagttatttagtgaggcatcttattttccaagtcaaatgaaaagaaagaaagaaagaaa 440
Query: 241 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 286
|||||||||| ||| ||| ||| ||| ||| |||||||||||||||
Sbjct: 441 gaaagaaagagagagagagagagagagagagagaaagaaagaaaga 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
