Query= MSMg01no233_e11.b1 MSMg01no233_e11.b1 CHROMAT_FILE:
MSMg01no233_e11.b1 PHD_FILE: MSMg01no233_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:57 2005
(301 letters)
>mm_chr18_54729577_54730278
Length = 702
Score = 538 bits (278), Expect = e-157
Identities = 296/302 (98%), Gaps = 1/302 (0%)
Strand = Plus / Plus
Query: 1 gttttatgtggagttccctgatccacttagatttgaccttagaacaaggagataggaatg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gttttatgtggagttccctgatccacttagatttgaccttagtacaaggagataggaatg 260
Query: 61 gatcaattcgcattcttctacatgataaccgcctggctcctttttaattctttgaagtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcaattcgcattcttctacatgataaccgcctggctcctttttaattctttgaagtta 320
Query: 121 gcgttatatccacagctgagttgtggctatcttctttagaccgagttttacatttacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgttatatccacagctgagttgtggctatcttctttagaccgagttttacatttacttt 380
Query: 181 tcccagacagaagcaaatagacttctactgacccatcgggggcaccaatgacagaatgac 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccagacagaagcaaatagatttctactgacccatcgggggcaccaatgacagaatgac 440
Query: 241 acagttattcttcacatatcagtgagtcatttatttattttttt-acaggagtgtaagtg 299
|||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 441 acagctattcttcacatatcagtgagtcatttagctattttttttacaggagtgtaagtg 500
Query: 300 ag 301
||
Sbjct: 501 ag 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 702
Length adjustment: 9
Effective length of query: 292
Effective length of database: 693
Effective search space: 202356
Effective search space used: 202356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_e11.g1 MSMg01no233_e11.g1 CHROMAT_FILE:
MSMg01no233_e11.g1 PHD_FILE: MSMg01no233_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:57 2005
(276 letters)
>mm_chr18_54821436_54822111
Length = 676
Score = 497 bits (257), Expect = e-145
Identities = 272/277 (98%), Gaps = 2/277 (0%)
Strand = Plus / Minus
Query: 1 aacacatgaaaagcctgttctccttgctgttcccaagcacacaagcgtgaggatagactt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aacacatgaaaagccttttctccttgctgttcccaagcacacaagcgtgaggatagactt 417
Query: 61 cgagccagttctgtagacagaatcacagtcttgtgtaatttcttacttatggtttcttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cgagccagttctgtagacagaatcacagtcttgtgtaatttcttacttatggtttcttaa 357
Query: 121 aaatacagc-tactcctatttacagttagattccctttaaatgttattgtaggtcttttg 179
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 aaataca-cttactcttatttacagttagattccctttaaatgttattgtaggtcttttg 298
Query: 180 gcagttctttcagtagagagcaaaggcctggttgtgacttctacaatgctcaacacattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gcagttctttcagtagagagcaaaggcctggttgtgacttctacaatgctcaacacattt 238
Query: 240 atagagttaagtgtgttttgcatagctttgataaacg 276
|||||||||||||||||||||||||||||| ||||||
Sbjct: 237 atagagttaagtgtgttttgcatagctttggtaaacg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
