BAC Information

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BAC

Clone NameMSMg01-233M16
Chromosome18 (Build37)
Map Location 13,353,179 - 13,353,464
singlet/doubletsinglet
Overlap genenone
Upstream geneNpc1, Ankrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354
Downstream geneLOC665379, LOC100040358, Zfp521, LOC100040094, LOC100040103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233M16.T7 (MSMg01no233_m16.b1)MSMg01-233M16.TJ (MSMg01no233_m16.g1)
ACCAG399880AG399881
length759737
length of high quality
(start - end)
320 (42 - 361)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no233_m16.b1 PHD_FILE: MSMg01no233_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:35 2005CHROMAT_FILE: MSMg01no233_m16.g1 PHD_FILE: MSMg01no233_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGGGTTCAGTCCTTATGAGGCATGGTGACACACACCTGTTATTCCAGC
ACAGAGCAGAGAAAACCAGGAGGATCAGAAGTTCAGTGCTGCTCCCTGCT
GCACAGTGGGAAGAGGAGATGCACGAGACTGTCTAAAAACATCAAGGAGC
ATTTAAGCCATTTTAAGTGTAGGATTTAGTGGTAGTAAGTCTATTCACCT
TCGTGAATTTAATGTTCATTCTGTAAAACTGAGACTCTGCCTACTACACA
AACCCTCGTTCTCCACGCTCCTGGGCTCTGACCACACTTTACTTTGTGTT
TCTATGTGTTCATTCTTGGCACCACTTCACATAAGTGAAATCACACACTG
TGTTCAGTCCTTGACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTACCCTTTTTCATCCATGATTTATTTCCTTATTATGTATTCTTTCCCC
ATCCTATTCCCTTTTTAACACTCTTATATTATTCCAAATGTTTTTCCCCC
TTTTATTTGTTATATTAGCTTTTATTCACTTTTTTTGTTTCCTTTGTTTA
TACTCAGATTATTCCACGTTTTCTTTCATCTTTTCCTCCATATTTTCCTT
TTTGTCCCTCCAAATATCATTTTCTACTTTTATTTTTTTACCTATCCGTC
TCCACCCTCTCACTCTATTTTTTGTCTCCCCCTTTTTTTTGCTCCTTTAT
TTCTATTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGATGAATTTGAAATTAAAATACAAGG
AAGGAAATCCATACTTAGCCATAGATTTTTTAAAAAAAAATATATATATA
TATTAGGGGTGGCCAGGGCCTTTCTCATGTGAAGACAAAGGCAGAAACTA
AAAAGTTAATATTGGTAATTAGACTTCATTAAAATTTAAAGTTCTGGAGA
GAAAATCATGGCTAAAAGAAATTAAATTTGGGAAAAGATATTCCTCAAGT
TTTACTAAAGAGTATTCAGTAGCTTCAATGTGATACAGTTATCGTATAAC
TTTATCTGAAGATTTGATCGCNACCCAGCCACACACACAAATAAATGTAT
GGGGCCTTTCAGAACTGCCAACCATAAAAAGTCAGAAAGCNNAACAGATC
CCTGGTCTTGCTAGTAACATGCCCAAAAGAATATGTATAGACATACAGAA
AAGAATCTAGAAAGACAGACACCAACGTGCTCATAGAGGTAACCGCTGAA
ACTGCCTGCTGGCAGCAGGAACATCCAGCTATATCTACATTCCCAAAGGA
CTGCCAGCCCAAGGACAGCCAGGCCTACCAACATCTGGGACAACCAGGTA
AGATTTTGCCCCAGGCCCTTTGCCTGCCAGGTACCCTAAGGTAAATAACA
GAAGCAGCGAAATGTTCCTTGTCCCCTGCACTCCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_m16.g1 MSMg01no233_m16.g1 CHROMAT_FILE:
MSMg01no233_m16.g1 PHD_FILE: MSMg01no233_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:35 2005
         (289 letters)



>mm_chr18_13352894_13353582
          Length = 689

 Score =  499 bits (258), Expect = e-146
 Identities = 281/292 (96%), Gaps = 9/292 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatgaatttgaaattaaaatacaaggaaggaaatccatacttagccataga---tttt 57
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 571 cagatgaatttgaaattaaaatacaaggaaggaaatccatacttagccatagattttttt 512

                                                                       
Query: 58  ttaaaaaaaaatatatatatatattaggggtggccagggcctttctcatgtgaagacaaa 117
           ||  ||||||||||||||   | |||| ||||||||||||||||||||||||||||||||
Sbjct: 511 tt--aaaaaaatatatat---t-ttagaggtggccagggcctttctcatgtgaagacaaa 458

                                                                       
Query: 118 ggcagaaactaaaaagttaatattggtaattagacttcattaaaatttaaagttctggag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggcagaaactaaaaagttaatattggtaattagacttcattaaaatttaaagttctggag 398

                                                                       
Query: 178 agaaaatcatggctaaaagaaattaaatttgggaaaagatattcctcaagttttactaaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agaaaatcatggctaaaagaaattaaatttgggaaaagatattcctcaagttttactaaa 338

                                                               
Query: 238 gagtattcagtagcttcaatgtgatacagttatcgtataactttatctgaag 289
           |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 337 gagtattcagtagcttcaatgtgatacagttatcatataactttatctgaag 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)