Query= MSMg01no233_o19.b1 MSMg01no233_o19.b1 CHROMAT_FILE:
MSMg01no233_o19.b1 PHD_FILE: MSMg01no233_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:44 2005
(647 letters)
>mm_chr18_28115408_28116454
Length = 1047
Score = 1054 bits (545), Expect = 0.0
Identities = 602/643 (93%), Gaps = 37/643 (5%)
Strand = Plus / Plus
Query: 5 gaattcctgaaatggagccagggagcggactgggttcattttctagctattcatttcaat 64
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaaatggagccagggagtggactgggttcattttctagctattcatttcaat 264
Query: 65 aaggcaattctctggctgtccttgagtatgaggctcaattctggactacatgaagaggaa 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggcagttctctggctgtccttgagtatgaggctcaattctggactacatgaagaggaa 324
Query: 125 gattgcagacaaggtggttttcctgtctgtttcaatacaattgcacacttgttccccaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattgcagacaaggtggttttcctgtctgtttcaatacaattgcacacttgttccccaaa 384
Query: 185 gtttggttttaaaattgcatatatatatatacaatttatatataatatatatatgtatat 244
||||||||||||||||||||||||||||| |||||| |||
Sbjct: 385 gtttggttttaaaattgcatatatatata-------tatatacaat-------------- 423
Query: 245 gtatatatatatatatatatacatatataagcaaatgatacaagaaaggaaataatttaa 304
| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 424 -------------t-tatat--atatataagcaaatgatacaagaaaggaaataatttaa 467
Query: 305 tcatcatccattaaaatctaatcatgatttcagaagctgaaattagagccctggattgtt 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tcatcatccattaaaatctaaacatgatttcagaagctgaaattagagccctggattgtt 527
Query: 365 tggtctggagagaggccaatgaagtttgagctccataacctgtgtggacaactacttcga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tggtctggagagaggccaatgaagtttgagctccataacctgtgtggacaactacttcga 587
Query: 425 aagaaggaatccactggccctttggggaaataggaagtacaaagacataacatgtgacag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aagaaggaatccactggccctttggggaaataggaagtacaaagacataacatgtgacag 647
Query: 485 gggaccatgactatagcagttatgtgagagatagtgaaaaaactaaggaaggtacaggaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gggaccatgactatagcagttatgtgagagatagtgaaaaaactaaggaaggtacaggaa 707
Query: 545 aaggtggaccccaccctaacctatcttggtctgtcattccaatgcagctgaagttataaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aaggtggaccccaccctaacctatcttggtctgtcattccaatgcagctgaagttataaa 767
Query: 605 tgaagctttctgactgcctcatgtctgggcatccttctgcccc 647
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tgaagctttctgactgcctcatgtctgggcatccttctgcccc 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_o19.g1 MSMg01no233_o19.g1 CHROMAT_FILE:
MSMg01no233_o19.g1 PHD_FILE: MSMg01no233_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:45 2005
(663 letters)
>mm_chr18_28180512_28181574
Length = 1063
Score = 1251 bits (647), Expect = 0.0
Identities = 659/663 (99%)
Strand = Plus / Minus
Query: 1 tctctgacctccagacctgtagcctttcatgattggttcagtggttttctcaggaaggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tctctgacctccagacctgtagcctttcatgattggttcagtggttttctcaggaaggct 804
Query: 61 gtcactttgcatggtgacagttgcttcccttccagcaatcaagtgtggggtatgcatgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtcactttgcatggtgacagttgcttcccttccagcaatcaagtgtggggtatgcatgta 744
Query: 121 tgttaaggtttgctcttctggaattcaaaattccgcagtgtcaacattgtggcacacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgttaaggtttgctcttctggaattcaaaattccgcagtgtcaacattgtggcacacaga 684
Query: 181 catgttaaacatggtttagatcttttctgcacaggaagctctacgatgccagactattaa 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 683 catgttaaacatggtttagatcttttctgcacaggaagttctacgatgccagactattaa 624
Query: 241 gagaaaggacaagtccagtgaggtgtgtcttcagggctttagttagatcataaaacagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 gagaaaggacaagtccagtgaggtgtgtcttcagggctttagttagatcatgaaacagaa 564
Query: 301 aaggagagagttgccatgggcagggaagatcagggaaaagcatggatttggggatatcag 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 563 aaggagagagttgccatgggcagggaagatcggggaaaagcatggatttggggatatcag 504
Query: 361 ggacatgtaaacagcatagttccaaatatctctcacagactagctgaagactctcaaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggacatgtaaacagcatagttccaaatatctctcacagactagctgaagactctcaaggc 444
Query: 421 tgatgaggctgtgtttaaatttctgaaatgcaccaaagttatgtccccaaaatggatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgatgaggctgtgtttaaatttctgaaatgcaccaaagttatgtccccaaaatggatact 384
Query: 481 ataagcaaaatattttatttaacctttcagttcaggtttcaaccttggtgtaaaaagaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ataagcaaaatattttatttaacctttcagttcaggtttcaaccttggtgtaaaaagaga 324
Query: 541 tgttttcagcttataaagtagaatggcaaaaagactggcaaatgttcacatatatctatc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgttttcagcttataaagtagaatggcaaaaagactggcaaatgttcacatatatctatc 264
Query: 601 cccttagaatgacagacaatgatcctccaatccagaatatctgggcagtaactcctgtca 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tccttagaatgacagacaatgatcctccaatccagaatatctgggcagtaactcctgtca 204
Query: 661 ctc 663
|||
Sbjct: 203 ctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
