BAC Information

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BAC

Clone NameMSMg01-234H01
Chromosome18 (Build37)
Map Location 21,753,687 - 21,753,978
singlet/doubletsinglet
Overlap geneKlhl14
Upstream geneDsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264
Downstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234H01.T7 (MSMg01no234_h01.b1)MSMg01-234H01.TJ (MSMg01no234_h01.g1)
ACCAG400332AG400333
length768747
length of high quality
(start - end)
---292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no234_h01.b1 PHD_FILE: MSMg01no234_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:26 2005CHROMAT_FILE: MSMg01no234_h01.g1 PHD_FILE: MSMg01no234_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTCCTGATTCTTTCAAAATGTTTGAATAGATTTAGTGAAAATGT
CCTATGTCATTATACTGCATTTACATCCTTTCTACCACTTCTCTGACATT
CCTTCTACACGCGCTCTCTGATTGTACTACATCTGAAATTCATGAGATCT
TCTACGATGGTGATTGTGAGTACGAAAGAGATACACTCCTCCATTGCTGA
CGCGATTGCACAATTGTATTTTTTACTATTTAATGAGTGATGCCAATCTA
GATTCTTTCTCAACCCATTGATCATTTGTGTTACAAAAGCTACTGACTTA
TTTGACTGAAACTTATATTCTTCTATTTTTCTGACCTTCTTTATCAAGTG
ATAGAAATTCTCTGTCGCGAATTTTGTCGATCTTAATACATACTATCCTA
TCATCTGTGAGTAATGATACTTTGACTTCATCTCTGTGCGTGCGTATGCC
CTTGATCTCTGTCTGTAGACTTATTACTCTATCTAGAACTGATCGTACTA
TGTTAAATATAAACTCCAAGAATAACCTTCCATTGTTGTCACCCGATCTT
ATAGGGGATTAGATTCACCATTACCTCTGTTTAATTCAGAATTGTGATGT
TGTGTCCCTTGGATATTCGCTTTTAATATGTATATCCACTTGTGGGACTT
TGATGTTCCCTGATTTCCTCCAGATATTTGTTACCCTCCAGGGAGTAACT
GCACATTGGTAGTACCGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGATGAAAGCTTAAAATTAGT
GTGTGCTATCAGAAACACCACTGTGGCCTTTTTAGTAATCTTGTCGACTT
TTCCAATCTTTGCAATTGAAGGTCCACCTACAGACAGCACATCTCATCTT
ATCAATGTGCACAGAAGATGAACTTGGAGCATCCCTTGTCAGCCCACATG
CTCCGATTGGCTTGAGTGTGATTTTCTACACAAAGAGTGAGCACACAGAC
TTGCCATCATCATCTCTGACTGCTAAAGGCTCAAAAAATTACTTGTGGCT
TAGTTGAGAGGTACAATCTATAAAGGGCGCTCGCCTAAGATGGCAAGGGA
GAATAAAATGCACATTTAAATTAATTAATTTCAAAATTTTTGAGGTAGCA
GAGGTTGCTCAGTGATTAAGGACATTTGTTGCTCTTTCAGAGTGCTGGAG
TACAGCTCCTATCTCCCAGGAAGAAGCAGGGAGAGGCAGAGAGAGAGAGA
GAGTGAAAGAGAGAGAGTGAGAGCGAGAGAGAGACAGAGACTGAGACAGA
CACAGACACAGAGACAGACACAGAGACACAGAGAAAGACAGAGAGACAGA
GAGGAGATCTTAAAATATATAATGGTTGAACATATGTGAACTGGCCAAAA
ATTGCGAGAGGATGCCTTTTGATGAAGAAGGAAAAACGACCACTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_h01.g1 MSMg01no234_h01.g1 CHROMAT_FILE:
MSMg01no234_h01.g1 PHD_FILE: MSMg01no234_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:26 2005
         (292 letters)



>mm_chr18_21753487_21754178
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggatgaaagcttaaaattagtgtgtgctatcagaaacaccactgtggcctttttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 agaggatgaaagcttaaaattagtgtgtgctatcagaaacaccactgtggcctttttagt 433

                                                                       
Query: 61  aatcttgtcgacttttccaatctttgcaattgaaggtccacctacagacagcacatctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aatcttgtcgacttttccaatctttgcaattgaaggtccacctacagacagcacatctca 373

                                                                       
Query: 121 tcttatcaatgtgcacagaagatgaacttggagcatcccttgtcagcccacatgctccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcttatcaatgtgcacagaagatgaacttggagcatcccttgtcagcccacatgctccga 313

                                                                       
Query: 181 ttggcttgagtgtgattttctacacaaagagtgagcacacagacttgccatcatcatctc 240
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 312 ttgacttgagtgtgattttctacacaacgagtgagcacacagacttgccatcatcatctc 253

                                                               
Query: 241 tgactgctaaaggctcaaaaaattacttgtggcttagttgagaggtacaatc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgactgctaaaggctcaaaaaattacttgtggcttagttgagaggtacaatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)