BAC Information

Click to search

BAC

Clone NameMSMg01-234H13
Chromosome18 (Build37)
Map Location 13,429,730 - 13,430,019
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354
Downstream geneLOC665379, LOC100040358, Zfp521, LOC100040094, LOC100040103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234H13.T7 (MSMg01no234_h13.b1)MSMg01-234H13.TJ (MSMg01no234_h13.g1)
ACCAG400352AG400353
length745745
length of high quality
(start - end)
700 (46 - 745)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no234_h13.b1 PHD_FILE: MSMg01no234_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:28 2005CHROMAT_FILE: MSMg01no234_h13.g1 PHD_FILE: MSMg01no234_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGCTTTT
CTGAAGTCCACCTTCTTGAGTTCCTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTACTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAACTTTGAGTGTCTCTGCCTTTATGTGAAGTTCTTTGATC
CATTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGCTC
TGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTA
TCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCAG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATTGCT
GAGAAGCACCTGAAAAAACATGTTCAGCATCCTTAATTAATGGGCTAAGG
TTTCCTTTACTGCTGATACCTTCACCACTCAGTGAGGTATGTAGGCTGGC
ACCATTGATATCACGCTGGGGACCACATTGATTTTAGGTCTTCCCAAATC
ACAATGTATATTTGAGTGAAGTCCCTAGACAATGCTTAGTCATCTGGGAA
CTCACAAGCTTTTCTGAGTAGCTTTGCTCATCACTTCTAACTTGAATCTG
CCACCATAGCATCCTTGTCTAGTTCACACCCCCCAGACATGAAGAAATTG
ACCATCAAGGACTTTTTATGTTGTCTGAAAATCACCCTTTTAGAGGAGCC
ACAGCAATAGCAGAACCTGACTGCAGACCTTGCAATAGTCCCACCCAGAA
TCAGAAGGTTCTAGGCAACACGTCCCATGGGCCTGATAGACAAGGTCTAG
GACAACCTGTTGATCAAACTGTTTTAGCTTGTACTTTAGACCAGAGGCTA
AACAGACACCTTTCCCTCCAATGTTTACAGTAATGGAAAACTCCTTGATC
TAGGTAATTTATTTAATGAGTAGCTCCAAATATTTGGTTTCCAGCTAACA
GCAGTCCTAATAAAAAAAAAAATTACAGGCTAGCTTAATTGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_h13.g1 MSMg01no234_h13.g1 CHROMAT_FILE:
MSMg01no234_h13.g1 PHD_FILE: MSMg01no234_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:28 2005
         (290 letters)



>mm_chr18_13429467_13430156
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctgaggaataccgaattgctgagaagcacctgaaaaaacatgttcagcatccttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcacctgaggaataccgaattgctgagaagcacctgaaaaaacatgttcagcatccttaa 494

                                                                       
Query: 61  ttaatgggctaaggtttcctttactgctgataccttcaccactcagtgaggtatgtaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttaatgggctaaggtttcctttactgctgataccttcaccactcagtgaggtatgtaggc 434

                                                                       
Query: 121 tggcaccattgatatcacgctggggaccacattgattttaggtcttcccaaatcacaatg 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tggcaccattgatatcacactggggaccacattgattttaggtcttcccaaatcacaatg 374

                                                                       
Query: 181 tatatttgagtgaagtccctagacaatgcttagtcatctgggaactcacaagcttttctg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 373 tatatttgagtgaagtccctagacaatgcttggtcatctgggaactcacaagcttttctg 314

                                                             
Query: 241 agtagctttgctcatcacttctaacttgaatctgccaccatagcatcctt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agtagctttgctcatcacttctaacttgaatctgccaccatagcatcctt 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)