Query= MSMg01no236_d12.b1 MSMg01no236_d12.b1 CHROMAT_FILE:
MSMg01no236_d12.b1 PHD_FILE: MSMg01no236_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:44 2005
(518 letters)
>mm_chr18_43292835_43293751
Length = 917
Score = 905 bits (468), Expect = 0.0
Identities = 504/516 (97%), Gaps = 2/516 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctgaaa-tctcctcagagggagcaccagtcctaatacccatcatctatggatc 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcctgaaaatcaagtcagagggagcaccagtcctaatacccatcatctatggatc 262
Query: 63 catggacccctcccctctcttctttaagctttagttttctcactacataatggataaaat 122
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 catggacccctcccctctcttctttaagctttagttttctcactgcataatggataaaat 322
Query: 123 aataataaacttgcagagatatggagaaaacaaaattgcataatgtcaatgagactagca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aataataaacttgcagagatatggagaaaacaaaattgcataatgtcaatgagactagca 382
Query: 183 atgcactgtatggtatgggtcggggactcaaacaatgcagcaatatattctgtttttgtt 242
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgcactgcatggtatgggtcagggactcaaacaatgcagcaatatattctgtttttgtt 442
Query: 243 ttgttttttgtttgtttgcttgtttgtttttgttttttctagccagcatttctctgtata 302
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 443 ttgtgttttgtttgtttgcttgtttgtttttgttttttcgagccagcatttctctgtata 502
Query: 303 gctctggctgtcctggaactcactctgtagaccagactggccttgaactcagaaatctgc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gctctggctgtcctggaactcactctgtagaccagactggccttgaactcagaaatctgc 562
Query: 363 ctgcctctgccttccaagtgctgggattaaagatgtaaaccaccactgcctggcatattc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgcctctgccttccaagtgctgggattaaagatgtaaaccaccactgcctggcatattc 622
Query: 423 tttttttttttaatgcatggctaacagtaacaacaatgtgttgctaacagtaacaataag 482
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttttttttt-aatgtatggctaacagtaacaacaatgtgttgctaacagtaacaataag 681
Query: 483 aacccataataaatctagtctgtccaaaattgagag 518
||||||||||||| ||||||||||||||||||||||
Sbjct: 682 aacccataataaacctagtctgtccaaaattgagag 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_d12.g1 MSMg01no236_d12.g1 CHROMAT_FILE:
MSMg01no236_d12.g1 PHD_FILE: MSMg01no236_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:44 2005
(289 letters)
>mm_chr18_43391520_43392209
Length = 690
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 1 aatctctagaacccagatgatggaaggggagaacccacccctgcaagttcccctctggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 aatctctagaacccagatgatggaaggggagaacccacccctgcaagttgtcctctggcc 431
Query: 61 ttgtgtgacatacatgcatatgtgtgcatgagcaaacacacacacactgaaatgtgaatg 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgtgtgacatacatgcatatgtatgcatgagcaaacacacacacactgaaatgtgaatg 371
Query: 121 tgttatgacgcccttgtgaggtggatagtaccagaagtctccatgtggatgttttcctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgttatgacgcccttgtgaggtggatagtaccagaagtctccatgtggatgttttcctag 311
Query: 181 tactattgccagttcagatttccttgcagatactgga-tttttttttatcttaaagcctc 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 310 tactattgccagttcagatttccttgcagatactggattttttttttatcttaaagcctc 251
Query: 240 aagctttgcattattttccaaatagtgttgagagctaccattgttttctc 289
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagctttgcattattttccaaatagtgttgagagctaccattgttttctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space: 190680
Effective search space used: 190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
