Query= MSMg01no236_o18.b1 MSMg01no236_o18.b1 CHROMAT_FILE:
MSMg01no236_o18.b1 PHD_FILE: MSMg01no236_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:36 2005
(369 letters)
>mm_chr18_78813116_78813885
Length = 770
Score = 640 bits (331), Expect = 0.0
Identities = 361/371 (97%), Gaps = 5/371 (1%)
Strand = Plus / Plus
Query: 1 aagcccacttgttaaaacgtcagttgtcctaagtaggagaattgaaggcacacatgctat 60
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aagccctcttgttaaaacgtcagttgttctaagtaggagaattgaaggcacacatgctat 260
Query: 61 atgcagt-aagggtgggctgt-acatccagccaaggtcaggatgcat-caaacctgcaag 117
||||||| ||||||||||| | ||||||||||||||||||||||||| | ||||||||||
Sbjct: 261 atgcagtaaagggtgggct-tcacatccagccaaggtcaggatgcatac-aacctgcaag 318
Query: 118 ttaaaatgagcaatgggattaaaagactgcttgtttaactgctggggtctgcggtgctaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttaaaatgagcaatgggattaaaagactgcttgtttaactgctggggtctgcggtgctaa 378
Query: 178 cacagagatcttcaaggagggacatgtcttctgtgaaaagtgttgccggcctctgtgcga 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 379 cacagagatcttcaaggagggacatgtcttctgtgaaaagtgttgccagcctctgtgcga 438
Query: 238 cagatatgtttccagaggcacaaaccattgcacgaggaccagaggaagctgaagtgtgta 297
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 439 cagatatgtttccagaggcacaaaccattgcccgaggaccagaggaagctgaagtgtgta 498
Query: 298 actcagtttacaatgttgagcgaacaccccagtctaattcagtgagagtgcacgggaggg 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 actcagtttaaaatgttgagcgaacaccccagtctaattcagtgagagtgcacgggaggg 558
Query: 358 ggaaggctgcc 368
|||||||||||
Sbjct: 559 ggaaggctgcc 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 770
Length adjustment: 9
Effective length of query: 360
Effective length of database: 761
Effective search space: 273960
Effective search space used: 273960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_o18.g1 MSMg01no236_o18.g1 CHROMAT_FILE:
MSMg01no236_o18.g1 PHD_FILE: MSMg01no236_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:36 2005
(235 letters)
>mm_chr18_78965132_78965765
Length = 634
Score = 387 bits (200), Expect = e-112
Identities = 224/236 (94%), Gaps = 9/236 (3%)
Strand = Plus / Minus
Query: 1 cctaggaaacatgagtctgcgcttgcagtgaacagtttcaatgatagaaaaggtattaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cctaggaaacatgagtctgcgcttgcagtgaacagtttcaatgatagaaaaggtattaat 372
Query: 61 ggcgagaaatgaaactgtgtaagggtctcagcaaagtatgtgtacacactacatggcctg 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 371 ggcgagaaatgaaactgtgtaaggttctcagcaaagtatgtgtacacactacatggcctg 312
Query: 121 cattcaggatttgccccagagggatggcagaacccagaaaaaaagagatgcccactattg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 311 cattcaggatttgccccagagggatggcagaacccagaacaaaagagatgcccactattg 252
Query: 181 tcttgccatttcgtc----gttttagccagattcacaacccaagtgaccttgctgg 232
|||||||| |||||| | |||||||| |||||||||||||||||||||||
Sbjct: 251 tcttgcca-ttcgtcagggg----agccagatccacaacccaagtgaccttgctgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 634
Length adjustment: 9
Effective length of query: 226
Effective length of database: 625
Effective search space: 141250
Effective search space used: 141250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
