BAC Information

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BAC

Clone NameMSMg01-237F22
Chromosome18 (Build37)
Map Location 73,979,392 - 74,162,817
singlet/doubletdoublet
Overlap geneMro, Mapk4
Upstream geneLOC100043411, LOC100042955, Rkhd2, Smad4, Elac1, Me2
Downstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237F22.T7 (MSMg01no237_f22.b1)MSMg01-237F22.TJ (MSMg01no237_f22.g1)
ACCAG402337AG402338
length719705
length of high quality
(start - end)
250 (435 - 684)227 (116 - 342)
definitionCHROMAT_FILE: MSMg01no237_f22.b1 PHD_FILE: MSMg01no237_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:11 2005CHROMAT_FILE: MSMg01no237_f22.g1 PHD_FILE: MSMg01no237_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,979,392 - 73,979,641)(74,162,591 - 74,162,817)
sequence
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTAGAGCCCCTGCCTGGCAT
ACAGGTGATGTTCAGGATATACTCCCTATCTTTTATTAGGACATTAATTT
TTGCTGAACATTGCTTTTCAAATCTCATTTACATACTAAAATTATTTCAC
CGAATTAGTAAGACCATGAGGTTAGCATAACTATTGTTGAATTTTACTTA
CCAGAATACTGGGGACTAGAAGGCTACTCTCTCCACAAGTACCACTAGTA
AGTGGAAAGGAAAGTCAAACTATGCTACAAACATTTGTTTTAGTATTTCT
ATGTACAAGTTGTTTTTTTGCTGCGCCACACCAATGTAACAGGCCCCACC
CTGGACCCAGTGAGTAAACAAACCCTGAAAAGACAGCTTTGGGCACTCTG
TTGCTTTGTGTTTTGTTTCTTTGTTTCTGTCATTCTGGGGATGGAACCCA
GGCATGCCAGGCAAGCTGCCTACTACAGAGCCTCTGCCCTAGCAGGTGAA
TGGGGAGCAAGCTCAAGTTCACCATGCATCCATCTCGAGGAAATAGAGAA
ATAGTCGCTATGGACACAACCCCTCCCTCAAGACATCCTATTATAAAACA
ACCGCAAAGCATTCACTCACAGGAGCATCATAAGACTGTGTGTGCATCTT
CTCATAAACAGATTGTAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCA
TGCTCATGGCTTCCAGGCTCAGCATCTGATCGCCTTGGGAGGCCAGAGGG
CTGGCAGGCCTTCCAGACTGGAAAAGCTTTCCACTGTAGTTTGATCTCAC
CTCCCAGGAAGCCTAACCCTTGAAGTCTTTTCAGGGTCCTGGCAGTTCCC
TAGGATCTGTGCAGCACGCTGTCCTATAATCTTACAGCAAGGCTGGAAGC
TTGCACCCAGTGATTTGGGGACCCGTGGTCTTATTTAATTTTATTCTTAA
CTATTCTTGATATATGTTTGTCTGAAGAAGAGACTGAGGGTCAGAGAATG
TTTGTTATCACCCCCCTCCGGATTGGAGTTACTTAGTTGTAGTTAGTTAG
TAGCCACAGCAAGGATAGAAACGAGGTTTCCTGGTAAGCTCTCCCCTTGC
CCGTGTCTTTTCCTTGGCCTTTGATGTATCATTCAATAAACATCACTAGA
CATTTTTATATCACAGGTTTTCTGACTAACAGCCGATTTCAGATCTATTT
GGCGGAGATGTCGAATTCAGATAAGTAATTCATACACAGTTGTTTGTTTA
ATAAGCCCAGGCTCTGGCACCTGCCGTTATTTGTTGATTTTTCCGTCTTA
TTTTATACCCAGATTGGTCCGGGGAGAGGAAGAAATGTGCCAAACAGTTT
GGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_f22.b1 MSMg01no237_f22.b1 CHROMAT_FILE:
MSMg01no237_f22.b1 PHD_FILE: MSMg01no237_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:11 2005
         (250 letters)



>mm_chr18_73979192_73979841
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 247/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctttgggcactctgttgctttgtgttttgtttctttgtttctgtcattctggggatgg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctttgggcactcttttgctttgtgttttgtttctttgtttctgtcattctggggatgg 260

                                                                       
Query: 61  aacccaggcatgccaggcaagctgcctactacagagcctctgccctagcaggtgaatggg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 261 aacccaggcatgccaggcaagctgcctactacagagcctttgccctagcaggtgagtggg 320

                                                                       
Query: 121 gagcaagctcaagttcaccatgcatccatctcgaggaaatagagaaatagtcgctatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcaagctcaagttcaccatgcatccatctcgaggaaatagagaaatagtcgctatgga 380

                                                                       
Query: 181 cacaacccctccctcaagacatcctattataaaacaaccgcaaagcattcactcacagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacaacccctccctcaagacatcctattataaaacaaccgcaaagcattcactcacagga 440

                     
Query: 241 gcatcataag 250
           ||||||||||
Sbjct: 441 gcatcataag 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no237_f22.g1 MSMg01no237_f22.g1 CHROMAT_FILE:
MSMg01no237_f22.g1 PHD_FILE: MSMg01no237_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:11 2005
         (227 letters)



>mm_chr18_74162391_74163017
          Length = 627

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactggaaaagctttccactgtagtttgatctcacctcccaggaagcctaacccttgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 427 gactggaaaagctttccactgtagtttgatctcacctcccaggaaacctaacccttgaag 368

                                                                       
Query: 61  tcttttcagggtcctggcagttccctaggatctgtgcagcacgctgtcctataatcttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcttttcagggtcctggcagttccctaggatctgtgcagcacgctgtcctataatcttac 308

                                                                       
Query: 121 agcaaggctggaagcttgcacccagtgatttggggacccgtggtcttatttaattttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agcaaggctggaagcttgcacccagtgatttggggacccgtggtcttatttaattttatt 248

                                                          
Query: 181 cttaactattcttgatatatgtttgtctgaagaagagactgagggtc 227
           ||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 247 cttaactattcttgagatacgtttgtctgaagaagagactgagggtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)