BAC Information

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BAC

Clone NameMSMg01-237L05
Chromosome18 (Build37)
Map Location 10,258,489 - 10,258,782
singlet/doubletsinglet
Overlap genenone
Upstream gene9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344
Downstream geneLOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237L05.T7 (MSMg01no237_l05.b1)MSMg01-237L05.TJ (MSMg01no237_l05.g1)
ACCAG402574AG402575
length718731
length of high quality
(start - end)
400 (106 - 505)341 (73 - 413)
definitionCHROMAT_FILE: MSMg01no237_l05.b1 PHD_FILE: MSMg01no237_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:35 2005CHROMAT_FILE: MSMg01no237_l05.g1 PHD_FILE: MSMg01no237_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATTTGCAGAGGATCCGCGGAATTCCTTCATTTTTCTATATGTAT
TGTATGTATGTGTGTATCCCTGGCTGGCTTGAACTTGCTATATAGACCTG
GCTGGCTTTGAACTCATCTGCCTCTCAACTTATGATTTAATTAAATAGAA
TTTCATCACTTCCCCTATCCTTTTCTCCCTCAATCCTTTCCCAACTTCTC
CCCCCTATTCCTTTTCAAACTCGTATCTTCCTATTCTTTATTACTGCTAC
ATGTATGTGTGTGTGTATGTATGTGTACGAATAAATATATAATTTCAACC
TGTTGAGTCTGTTTAGTGTTGCTTGCATGTATATTTTTTTTAGGGCTGAC
CACTTAAGATTGGATAATTAATTATAGAGGATGCCCATCCCCGAGGAAGA
CTAGCTTTTCACCTGGGGTGGAGTTTAGTGCAATCCTCCACCCTGGCATG
TCAATTGTGTCGTTATTGTTCAGGTCTTGTTTATTTAGCCATATTGCTGA
GGTTTTGTGGGTGTAGCTTCCCCGTTATATCAGAAGACATGGTCTTCTAT
CAGACATCCTGGACCTCTGGCTCTTAAACTCTTTCTAGATACTGGGTTTT
CTTCTAACATAGATTGATTCACATGTTCTTTTGCTTTTTTGAGGCAAAAA
AACCATTTTCTTGCCCCTCGGGATCCCTTCCTGGTTACCCAAGGAAAACG
CACTTCAGTCTTCCTTCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTATTGAAACTGGGATGGGTCTAAGCC
TTGCTGCTGTTGAATAATATTCCATTTGCAGGAATAATGGTGTGCTGTGC
TGCTAAGACATTTTTATTTATCTGTTTTCTAGCATCAAAATCTTGCATCT
GGGCAGAGAAGATGGTTCAGTCAGTAGGGTGCTTACAGGTTTGATCCCTA
GTACCCACAAAACCATCGGGCATAATGATGTGACTGAATCCCAGTACTGG
GAAGACAAAGAGAGGAGGATTTCTGGGGCTTGCTTGCCAGCCCACCTAGC
CCAGTTAATAAATTTCATTGTCAGTGAGAGACTATCTCAAAAGAAAAACA
AAAACAAACAAACAACAAACAAACATGGAAAGCTAATGAGAAAGACTCAG
CATCAACCTCTGACTTCGACATGTAGCACCTACAAGTTCACACACATGTG
CATACACACATGAACATGTACATACACAAACAAATCTCAGTTCTATTTTT
AAATTGCTTTATTTAACTTTATTATTAAAATATAATTTCCCATCATGAAG
TTTCTACTCTCTTTTAAATTATTTTTACATTTATATTTGTGTGCGTGTGT
GCGTTGTGTGTGTGTATGTGCTTGCGTCACCCTTTTAAATATTCCCTTTT
TTTGTCTCCCTTAGCCAGCCATACTTCTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_l05.g1 MSMg01no237_l05.g1 CHROMAT_FILE:
MSMg01no237_l05.g1 PHD_FILE: MSMg01no237_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:35 2005
         (341 letters)



>mm_chr18_10258245_10258985
          Length = 741

 Score =  516 bits (267), Expect = e-151
 Identities = 290/301 (96%), Gaps = 9/301 (2%)
 Strand = Plus / Plus

                                                                       
Query: 41  aataatattccatttgcaggaataatggtgtgctgtgctgctaagacatttttatttatc 100
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aataata----atttgcaggaataatggtgtgctgtgctgctaagacatttttatttatc 300

                                                                       
Query: 101 tgttttctagcatcaaaatcttgcatctgggcagagaagatggttcagtcagtagggtgc 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttttctagcatcaaaatcttgcatctgggcagagaagatggttcagtcagtagggtgc 360

                                                                       
Query: 161 ttacaggtttgatccctagtacccacaaaaccatcgggcataatgatgtgactgaatccc 220
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 361 ttacaggtttggtccctagtacccacaaa-ccatcgggcataatgatgtgactgaatccc 419

                                                                       
Query: 221 agtactgggaagacaaagagaggaggatttc--tggggcttgcttgccagcccacctagc 278
           ||||||||||||||||||||||||||||  |  |||||||||||||||||||| ||||||
Sbjct: 420 agtactgggaagacaaagagaggaggat--ccgtggggcttgcttgccagcccgcctagc 477

                                                                       
Query: 279 ccagttaataaatttcattgtcagtgagagactatctcaaaagaaaaacaaaaacaaaca 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ccagttaataaatttcattgtcagtgagagactatctcaaaagaaaaacaaaaacaaaca 537

            
Query: 339 a 339
           |
Sbjct: 538 a 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)