Query= MSMg01no237_n17.b1 MSMg01no237_n17.b1 CHROMAT_FILE:
MSMg01no237_n17.b1 PHD_FILE: MSMg01no237_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:47 2005
(575 letters)
>mm_chr18_16414757_16415731
Length = 975
Score = 667 bits (345), Expect = 0.0
Identities = 364/371 (98%), Gaps = 2/371 (0%)
Strand = Plus / Minus
Query: 205 gcatttgcttaacatggaaaaaggtcttctaggtttgatctccagtcccacaaaaataaa 264
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 975 gcatttgcttagcatggaaaaaggtcttctaggtttgatctccagtcccagaaaaataaa 916
Query: 265 tgaaaatgtaaaggaaaccaccagctgtgtattcacctcataagactaataaaaaactac 324
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tgaaaatgtaaatgaaaccaccagctgtgtattcacctcataagactaataaaaaactac 856
Query: 325 ctggcccatgtagaaaaactataactgaggcacatttgtgtgcatgcatatgtttgtgtg 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 855 ctggcccatgtagaaaaactataactgaggcacatttgtgtgcatgcatatgtt--tgtg 798
Query: 385 tgtgtgtttgtgtgtgtgtatgaaatactgtaaaataaaataatacaaattattgtgttt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgtgtgtttgtgtgtgtgtatgaaatactgtaaaataaaataatacaaattattgtgttt 738
Query: 445 tgaaatatttaatatgttacagatcagaaaaaaagaagaagaaaaatatagttaatctca 504
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgaaatatttaacatgttacagatcagaaaaaaagaagaagaaaaatatagttaatctca 678
Query: 505 ggaccaagaaggctgtctatctgaaacaccattcataaaccatacaccatttctgtctct 564
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggactaagaaggctgtctatctgaaacaccattcataaaccatacaccatttctgtctct 618
Query: 565 cagcaggtagt 575
|||||||||||
Sbjct: 617 cagcaggtagt 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_n17.g1 MSMg01no237_n17.g1 CHROMAT_FILE:
MSMg01no237_n17.g1 PHD_FILE: MSMg01no237_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:47 2005
(623 letters)
>mm_chr18_16345890_16346912
Length = 1023
Score = 1189 bits (615), Expect = 0.0
Identities = 621/623 (99%)
Strand = Plus / Plus
Query: 1 aatatgtaagacccttcctatggcaaacgcatttcaaagttaaatttattaaattcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatgtaagacccttcctatggcaaacgcatttcaaagttaaatttattaaattcaaat 260
Query: 61 gtataaattaaataacaggtcctgggtacaaggattgaaagctcctatttttctactcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtataaattaaataacaggtcctgggtacaaggattgaaagctcctatttttctactcta 320
Query: 121 aaaaagggtagtaataatctattgttaataggctcaaagatcattggtattttatttgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaagggtagtaataatctattgttaataggctcaaagatcattggtattttatttgat 380
Query: 181 atgccattgcatttgcatgtgaatttgagtgcaactcatattctgaaaatagacctaaaa 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgccattgcatttgcgtgtgaatttgagtgcaactcatattctgaaaatagacctaaaa 440
Query: 241 ttctgaataaaacttgataaaatttctagagtttatttgccgtttgttttcccttgtatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgaataaaacttgataaaatttctagagtttatttgccgtttgttttcccttgtatt 500
Query: 301 tatccacactcattcaccatcttcacttcatttaatataggtcatgagacataaatagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatccacactcattcaccatcttcacttcatttaatataggtcatgagacataaatagag 560
Query: 361 gtcagtagcaagcacaatggccttccttccttaacaacatggaaagagtcctgagatgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcagtagcaagcacaatggccttccttccttaacaacatggaaagagtcctgagatgtg 620
Query: 421 gtcagcactttaattatcatacagtgttcccttcccgagatagagtggtggtgtacacct 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcagcactttaactatcatacagtgttcccttcccgagatagagtggtggtgtacacct 680
Query: 481 ggggtctcaacactgaggaggatggtgaagcaagatgcagagttcaagcctaggttggct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggggtctcaacactgaggaggatggtgaagcaagatgcagagttcaagcctaggttggct 740
Query: 541 ctgtaaataaactatttctaagaaggtaagagagaagagtagtaggggaatcctatccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtaaataaactatttctaagaaggtaagagagaagagtagtaggggaatcctatccca 800
Query: 601 aaacctaggatacccaagatata 623
|||||||||||||||||||||||
Sbjct: 801 aaacctaggatacccaagatata 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
