Query= MSMg01no260_k10.b1 MSMg01no260_k10.b1 CHROMAT_FILE:
MSMg01no260_k10.b1 PHD_FILE: MSMg01no260_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:48 2005
(483 letters)
>mm_chr18_33887294_33888179
Length = 886
Score = 855 bits (442), Expect = 0.0
Identities = 471/482 (97%), Gaps = 3/482 (0%)
Strand = Plus / Plus
Query: 5 gaattcactggagttgccaaaagaaaacagactaacaagtatacaaactgcagaggtggg 64
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggagatgagaaaagaaaacagactaacaagtatacaaactgcagaggtggg 264
Query: 65 gggcaaagagagagatggggatagccagcttagtttcttggggccacacagagtgagata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggcaaagagagagatggggatagccagcttagtttcttggggccacacagagtgagata 324
Query: 125 tctctaaatcttgcttaggttgctgctgaagctcacagacccttggtcactgcctcagcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctctaaatcttgcttaggttgctgctgaagctcacagacccttggtcactgcctcagcc 384
Query: 185 ttctgttccctagaaagcaagattacagcctgatgtctcagtaaggaagtatataatgtt 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 ttctgttccctagaaagcaagattacagcctgatgtctcagtaaggaaatatataatgtt 444
Query: 245 ttcagtttcagaggcgatgtactaattaaggaatcctaagacatggctatgtgagttacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcagtttcagaggcgatgtactaattaaggaatcctaagacatggctatgtgagttacc 504
Query: 305 tcttaggaataaattttacaatcaagtgtgtgcccctttcatccttaggctgatttagtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttaggaataaattttacaatcaagtgtgtgcccctttcatccttaggctgatttagtt 564
Query: 365 tccattgacaccggcgtgtcctgaaatcaacactcttttttttttttttt---ctctttt 421
|||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 tccattgagaggggcgtgtcctgaaatcaacactcttttttttttttttttttctctttt 624
Query: 422 gctctgttaagatttgtttcctaagttcctagcttgtaaatatgattaccataccttttc 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctctgttaagatttgcttcctaagttcctagcttgtaaatatgattaccataccttttc 684
Query: 482 tg 483
||
Sbjct: 685 tg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 886
Length adjustment: 10
Effective length of query: 473
Effective length of database: 876
Effective search space: 414348
Effective search space used: 414348
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_k10.g1 MSMg01no260_k10.g1 CHROMAT_FILE:
MSMg01no260_k10.g1 PHD_FILE: MSMg01no260_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:49 2005
(535 letters)
>mm_chr18_33997741_33998675
Length = 935
Score = 884 bits (457), Expect = 0.0
Identities = 515/537 (95%), Gaps = 7/537 (1%)
Strand = Plus / Minus
Query: 1 atccaaacacatcggaggctagcactgtcctgataaccaacgcagattagaacacacgca 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 534 atccaaacacatcggaggctagcactgtcctgataaccaatgcagattagaatacacgca 475
Query: 61 catgtaggtctatgcgcacaaacatgcacacgtgtgcgtgtatatgcccagtatttaaac 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 474 catgtaggtctatgcgcacaaacatgcacacgtgtgcatgtatatgcccagtatttaaac 415
Query: 121 ttgtaatgaaaaagcacttttttttcatcttatatttatgtactgagatgcatagctttt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttgtaatgaaaaagcactgttttttcatcttatatttatgtactgagatgcatagctttt 355
Query: 181 aaaaattctttacctgaaagccttaaataccactgggttgcaacctcactgagaagaact 240
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 354 aaaacttctttacatgaaagccttaaataccactgggttgcaacctcacagagaagaact 295
Query: 241 caagcagggagatatctattgtaaagaacaactttctttcaactaagtaagcctttttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caagcagggagatatctattgtaaagaacaactttctttcaactaagtaagcctttttaa 235
Query: 301 agtaacccttgggggcccactcgtcggtgtgggagaaggagcacacccagaggccccccc 360
|||||||||||||||||||||||| ||||||||| |||||| |||||||||| |||||||
Sbjct: 234 agtaacccttgggggcccactcgttggtgtgggaaaaggaggacacccagag-ccccccc 176
Query: 361 cccagt----gtagccctcccataaagcaagccactacaatgagcaagtatgtgatggac 416
||| | |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 175 ccc--tccccgtagccctcccataaatcaagccactacaatgagcaagtatgtgatggac 118
Query: 417 agctgggagagaaagagatgccacagaacagtgtgagcatatgaagagaggttcaggtag 476
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 117 agctgggagagaaagagatgccatagaacagtgtgagcatatgaagagaggttcaggtag 58
Query: 477 agatgcgatggtggctggaaaggaacagcctgtcccgccacctgaggccatcgtgaa 533
||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 57 agatgtgatggtggctagaaaggaacagcctgtcccgccacctgaggccatggtgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
