MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-260N06
Chromosome	18 (Build37)
Map Location	32,961,582 - 32,962,230
singlet/doublet	singlet
Overlap gene	none
Upstream gene	EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
Downstream gene	Tslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258, Epb4.1l4a
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG626327 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626327 MGI:3643253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 48 ESTs, 20 Proteins

name	Wdr33 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74320 MGI:1921570
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sft2d3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67158 MGI:1914408
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 75 ESTs, 4 Proteins

name	Lims2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225341 MGI:2385067
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpr17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:574402 MGI:3584514
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myo7b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17922 MGI:107709
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Iws1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73473 MGI:1920723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Proc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19123 MGI:97771
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC546710 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546710
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Map3k2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26405 MGI:1346873
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ercc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13872 MGI:95414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bin1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:30948 MGI:108092
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gypc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71683 MGI:1098566
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041160 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041160
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100041170 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041170
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins

name	Tslp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53603 MGI:1855696
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr36 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225348 MGI:1917819
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Camk4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12326 MGI:88258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Stard4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170459 MGI:2156764
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433170 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433170 MGI:3646950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	D0H4S114 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27528 MGI:99444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	ENSMUSG00000073610 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433171 MGI:3641986
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC666281 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666281
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins pseudo : _no_value

name	LOC100041258 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Epb4.1l4a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13824 MGI:103007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG626327 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404354 GeneID:626327 MGI:3643253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 48 ESTs, 20 Proteins product : predicted gene, EG626327 transcript_id : XM_890922.2

name	Wdr33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21362284 GeneID:74320 MGI:1921570
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 33 transcript_id : NM_028866.2

name	Sft2d3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404355 GeneID:67158 MGI:1914408
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 75 ESTs, 4 Proteins product : SFT2 domain containing 3 transcript_id : XM_484715.4

name	Lims2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347134 GeneID:225341 MGI:2385067
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM and senescent cell antigen like domains 2 transcript_id : NM_144862.2

name	Gpr17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71725393 GeneID:574402 MGI:3584514
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 17 transcript_id : NM_001025381.1

name	Myo7b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803316 GeneID:17922 MGI:107709
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin VIIb transcript_id : NM_032394.2

name	Iws1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348986 GeneID:73473 MGI:1920723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : IWS1 homolog (S. cerevisiae) transcript_id : NM_173441.2

name	Proc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112421030 GeneID:19123 MGI:97771
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein C transcript_id : NM_001042767.1

name	Proc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112421009 GeneID:19123 MGI:97771
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein C transcript_id : NM_008934.2

name	Proc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112421045 GeneID:19123 MGI:97771
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein C transcript_id : NM_001042768.1

name	Map3k2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89257353 GeneID:26405 MGI:1346873
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen activated protein kinase kinase kinase 2 transcript_id : NM_011946.2

name	Ercc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19526799 GeneID:13872 MGI:95414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : excision repair cross-complementing rodent repair deficiency, complementation group 3 transcript_id : NM_133658.1

name	Bin1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053916 GeneID:30948 MGI:108092
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bridging integrator 1 transcript_id : NM_009668.2

name	Bin1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053946 GeneID:30948 MGI:108092
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : bridging integrator 1 transcript_id : NM_001083334.1

name	Gypc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115270964 GeneID:71683 MGI:1098566
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycophorin C transcript_id : NM_001048207.1

name	LOC100041160 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269693 GeneID:100041160
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041160 transcript_id : XM_001475894.1

name	LOC100041170 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269695 GeneID:100041170
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins product : similar to loricrin transcript_id : XM_001475913.1

name	Tslp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:10946697 GeneID:53603 MGI:1855696
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thymic stromal lymphopoietin transcript_id : NM_021367.1

name	Wdr36 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374488 GeneID:225348 MGI:1917819
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 36 transcript_id : NM_144863.3

name	Camk4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377596 GeneID:12326 MGI:88258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium/calmodulin-dependent protein kinase IV transcript_id : NM_009793.2

name	Stard4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803493 GeneID:170459 MGI:2156764
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : StAR-related lipid transfer (START) domain containing 4 transcript_id : NM_133774.3

name	EG433170 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404359 GeneID:433170 MGI:3646950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG433170 transcript_id : XM_982610.1

name	D0H4S114 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33186876 GeneID:27528 MGI:99444
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, human D4S114 transcript_id : NM_053078.3

name	ENSMUSG00000073610 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269697 GeneID:433171 MGI:3641986
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : predicted gene, ENSMUSG00000073610 transcript_id : XM_001476022.1

name	Epb4.1l4a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87042271 GeneID:13824 MGI:103007
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : erythrocyte protein band 4.1-like 4a transcript_id : NM_013512.2

name	EG626327 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82996105 GeneID:626327 MGI:3643253
definition	codon_start : 1 product : similar to Glutathione S-transferase Mu 2 (GST class-mu 2) (Glutathione S-transferase pmGT2) (GST 5-5) protein_id : XP_896015.1

name	Wdr33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21362285 CCDS:CCDS29112.1 GeneID:74320 MGI:1921570
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] codon_start : 1 product : WD repeat domain 33 protein_id : NP_083142.2

name	Sft2d3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51770824 GeneID:67158 MGI:1914408
definition	codon_start : 1 product : SFT2 domain containing 3 protein_id : XP_484715.1

name	Lims2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450085 CCDS:CCDS29113.1 GeneID:225341 MGI:2385067
definition	GO_component : GO:0005925 - focal adhesion [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : LIM and senescent cell antigen like domains 2 protein_id : NP_659111.1

name	Gpr17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71725394 CCDS:CCDS29114.1 GeneID:574402 MGI:3584514
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 17 protein_id : NP_001020552.1

name	Myo7b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14161694 GeneID:17922 MGI:107709
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : myosin VIIb protein_id : NP_115770.1

name	Iws1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30352010 CCDS:CCDS29115.1 GeneID:73473 MGI:1920723
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : IWS1 homolog protein_id : NP_775617.1

name	Proc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112421031 GeneID:19123 MGI:97771
definition	EC_number : 3.4.21.69 GO_component : GO:0005576 - extracellular region [Evidence ISS] [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0003808 - protein C (activated) activity [Evidence ISS] [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0030236 - anti-inflammatory response [Evidence ISS]; GO:0007596 - blood coagulation [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence NAS] [Evidence ISS]; GO:0030195 - negative regulation of blood coagulation [Evidence ISS]; GO:0006508 - proteolysis [Evidence ISS] [Evidence IEA] codon_start : 1 note : inactivator of coagulation factors Va, VIII product : protein C protein_id : NP_001036232.1

name	Proc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112421046 GeneID:19123 MGI:97771
definition	EC_number : 3.4.21.69 GO_component : GO:0005576 - extracellular region [Evidence ISS] [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0003808 - protein C (activated) activity [Evidence ISS] [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0030236 - anti-inflammatory response [Evidence ISS]; GO:0007596 - blood coagulation [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence NAS] [Evidence ISS]; GO:0030195 - negative regulation of blood coagulation [Evidence ISS]; GO:0006508 - proteolysis [Evidence ISS] [Evidence IEA] codon_start : 1 note : inactivator of coagulation factors Va, VIII product : protein C protein_id : NP_001036233.1

name	Proc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112421010 CCDS:CCDS29116.1 GeneID:19123 MGI:97771
definition	EC_number : 3.4.21.69 GO_component : GO:0005576 - extracellular region [Evidence ISS] [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0003808 - protein C (activated) activity [Evidence ISS] [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0030236 - anti-inflammatory response [Evidence ISS]; GO:0007596 - blood coagulation [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence NAS] [Evidence ISS]; GO:0030195 - negative regulation of blood coagulation [Evidence ISS]; GO:0006508 - proteolysis [Evidence ISS] [Evidence IEA] codon_start : 1 note : inactivator of coagulation factors Va, VIII product : protein C protein_id : NP_032960.2

name	Map3k2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89257354 CCDS:CCDS29117.1 GeneID:26405 MGI:1346873
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence ISS]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : MEK kinase 2; MAP/ERK kinase kinase 2; MAPK/ERK kinase kinase 2 product : mitogen activated protein kinase kinase kinase 2 protein_id : NP_036076.2

name	Ercc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526800 CCDS:CCDS29118.1 GeneID:13872 MGI:95414
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]; GO:0005675 - transcription factor TFIIH complex [Evidence ISS] GO_function : GO:0043138 - 3' to 5' DNA helicase activity [Evidence ISS]; GO:0005524 - ATP binding [Evidence IEA]; GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence ISS] [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006265 - DNA topological change [Evidence ISS]; GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0006366 - transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006283 - transcription-coupled nucleotide-excision repair [Evidence ISS] codon_start : 1 note : excision repair 3 product : excision repair cross-complementing rodent repair deficiency, complementation group 3 protein_id : NP_598419.1

name	Bin1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753050 CCDS:CCDS29119.1 GeneID:30948 MGI:108092
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0006897 - endocytosis [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0030100 - regulation of endocytosis [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; amphiphysin-like; myc box dependent interacting protein 1; Amphiphysin 2 product : bridging integrator 1 isoform 1 protein_id : NP_033798.1

name	Bin1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053947 GeneID:30948 MGI:108092
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0006897 - endocytosis [Evidence IEA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0030100 - regulation of endocytosis [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; amphiphysin-like; myc box dependent interacting protein 1; Amphiphysin 2 product : bridging integrator 1 isoform 2 protein_id : NP_001076803.1

name	Gypc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115270965 GeneID:71683 MGI:1098566
definition	codon_start : 1 note : Gerbich antigen product : glycophorin C protein_id : NP_001041672.1

name	LOC100041160 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269694 GeneID:100041160
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475944.1

name	LOC100041170 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269696 GeneID:100041170
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475963.1

name	Tslp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946698 CCDS:CCDS29121.1 GeneID:53603 MGI:1855696
definition	GO_function : GO:0005125 - cytokine activity [Evidence IDA] codon_start : 1 product : thymic stromal lymphopoietin protein_id : NP_067342.1

name	Wdr36 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542010 GeneID:225348 MGI:1917819
definition	GO_component : GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0030515 - snoRNA binding [Evidence ISS] GO_process : GO:0006364 - rRNA processing [Evidence ISS] codon_start : 1 product : WD repeat domain 36 protein_id : NP_659112.2

name	Camk4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753252 CCDS:CCDS29122.1 GeneID:12326 MGI:88258
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0004683 - calmodulin regulated protein kinase activity [Evidence TAS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007270 - nerve-nerve synaptic transmission [Evidence IMP]; GO:0006913 - nucleocytoplasmic transport [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IMP]; GO:0007165 - signal transduction [Evidence IDA] codon_start : 1 exception : mismatches in translation note : Ca2+/calmodulin-dependent protein kinase type IV/Gr product : calcium/calmodulin-dependent protein kinase IV protein_id : NP_033923.1

name	Stard4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19526998 CCDS:CCDS29123.1 GeneID:170459 MGI:2156764
definition	GO_component : GO:0005739 - mitochondrion [Evidence TAS] GO_function : GO:0015485 - cholesterol binding [Evidence IEA] [Evidence ISS]; GO:0017127 - cholesterol transporter activity [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA] GO_process : GO:0006869 - lipid transport [Evidence IEA]; GO:0006694 - steroid biosynthesis [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : StAR-related lipid transfer protein 4 product : StAR-related lipid transfer (START) domain containing 4 protein_id : NP_598535.1

name	EG433170 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94404360 GeneID:433170 MGI:3646950
definition	codon_start : 1 product : hypothetical protein protein_id : XP_987704.1

name	D0H4S114 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716357 GeneID:27528 MGI:99444
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0017015 - regulation of transforming growth factor beta receptor signaling pathway [Evidence IDA] codon_start : 1 product : neuronal protein 3.1 protein_id : NP_444308.1

name	ENSMUSG00000073610 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269698 GeneID:433171 MGI:3641986
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476072.1

name	Epb4.1l4a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87042272 CCDS:CCDS29124.1 GeneID:13824 MGI:103007
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008092 - cytoskeletal protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 note : erythrocyte protein band 4.1-like 4 product : erythrocyte protein band 4.1-like 4a protein_id : NP_038540.2

name	LOC546710 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:546710
definition	number : 1 pseudo : _no_value

name	LOC666281 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666281
definition	number : 1 pseudo : _no_value

name	LOC666281 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666281
definition	number : 2 pseudo : _no_value

name	LOC666281 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666281
definition	number : 3 pseudo : _no_value

name	LOC666281 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666281
definition	number : 4 pseudo : _no_value

name	LOC100041258 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041258
definition	number : 3 pseudo : _no_value

name	LOC100041258 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041258
definition	number : 2 pseudo : _no_value

name	LOC100041258 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041258
definition	number : 1 pseudo : _no_value

clone name	MSMg01-092G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-184K24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-217B08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-503G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215B22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-142C10
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-260N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122P06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388I01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-260K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-100L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045N14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-107J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121J05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-304O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221I24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-260N06.T7 (MSMg01no260_n06.b1)	MSMg01-260N06.TJ (MSMg01no260_n06.g1)
ACC	AG403384	AG403385
length	759	763
length of high quality (start - end)	653 (39 - 691)	506 (70 - 575)
definition	CHROMAT_FILE: MSMg01no260_n06.b1 PHD_FILE: MSMg01no260_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:02 2005	CHROMAT_FILE: MSMg01no260_n06.g1 PHD_FILE: MSMg01no260_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:02 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAATCCGCGGAATTCA CTGCTCTGTCCCTGACCCGGGAAGCAGCTTGTATTTGATGAGGATTGGTT GGGACTGGGAATGAATATCACCCTCCATCATCTTCACACTCCAGACTCCC AAGCCCTGGGATTACAGGTGTATAGCACAATGCCAGCTCACTGGATAGAC AGTGCTCTCACTGACGTGATTTTATCCTTCTTCTCCTTCTCTTGTCTCAA CTATCTTTTCCCTCTCCCTCTATGGTTATATGATTAGTCACCCTTTATTT ACTCTGCCTTTTGTTTCCTTTCCTGGGATTCTAGCATTGTCTCCTGCCAG AAAGACAAGGATGAAAGTGAGATGAGTTATGGCAAGTTATTACCCAAACT GGTGATCTACTCACACCCATGCCATGTTTATATACAACTTATTAATTTTA AAATTAAATTTCTCAACATTGAGTTTGCACTGTACAAAGTTCATGCAATA TCAAACCAGGTTGCGTCTCCCAGGCCAGCTCTTGCTTTTGAATACTGGCC TTCGCTTGATTTTTCATTCCTATCTTGTAACAGGCAAACACACCGCATGA GCAGCAGATTATTAATGTTGTAGCTATTGGAGTGTTAGTCACTCTTACAG CTTGGCCATGGTAAATAGGTCTAGTTCATATGCTTTGGCTTCATTCAAAT CAGAAGGCTTTCATAAAGTAGCTAAGACTGTGTTGTTCTGAGTAGTACTA ATACAGTAT	ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGA TATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGG ATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGC TTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTG GAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATT TTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTT TCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGG TGTACAGTTATCCGCCGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCC AAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCC AGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTG CCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCTTAAT CTCTGCGACTCTCTCGTCCGTCCCAGATACGGCTGGTACTCTGTATTTCC ATATGGTCACCCGTGCAGCCTGCCCTCCGCGGATCCCCGGAGCCTACAAG GCTCCTGTCGCTGTCCTGTTGCACAAATCTTTTCAGGCCTGGTATACCCT CGTGCTCTTTCTA
quality values	Open. Hide. 28 33 33 37 34 37 37 37 31 31 30 30 30 30 33 37 40 43 43 59 31 31 31 30 29 22 21 7 9 8 7 6 6 9 7 8 8 10 15 22 34 34 41 31 31 31 31 36 36 36 33 33 59 59 23 25 10 12 10 10 10 17 22 33 36 36 32 30 25 30 34 43 50 53 57 57 57 53 57 57 50 50 50 53 53 53 53 53 53 68 68 42 50 47 51 51 47 54 54 54 54 57 57 59 68 68 57 57 47 47 50 57 68 68 68 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 68 51 51 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 46 46 46 46 46 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 52 52 57 44 68 68 68 57 57 57 68 68 68 68 57 57 57 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 59 59 59 57 57 59 57 57 57 57 57 57 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 48 48 44 57 47 46 48 57 57 57 57 47 47 48 48 48 48 57 57 43 43 43 43 43 43 46 46 48 43 43 43 48 59 48 48 48 48 48 48 59 59 57 57 57 59 59 59 48 48 48 48 59 59 48 48 37 37 37 37 37 25 29 12 12 11 12 12 12 19 31 31 59 59 59 59 59 59 59 59 31 26 21 17 24 19 16 16 24 24 39 48 48 59 59 59 48 48 48 59 48 54 54 54 54 57 59 59 57 57 57 57 54 57 57 59 59 57 57 57 59 59 57 57 59 57 59 59 57 59 57 57 57 57 57 57 57 57 54 54 54 57 57 57 57 57 59 59 59 57 68 57 57 57 57 54 54 54 54 47 47 43 43 39 39 43 43 43 43 43 43 59 57 57 57 57 50 50 50 50 50 50 50 57 57 57 59 57 57 48 59 59 48 37 37 37 37 37 37 34 23 23 27 25 32 24 22 8 8 8 17 21 39 41 41 41 59 59 59 59 59 59 41 30 24 17 20 17 21 17 28 25 30 30 33 39 39 36 28 28 21 21 15 18 15 13 8 8 8 21 22 47 47 47 43 39 35 32 32 33 33 20 23 12 18 18 30 28 18 19 10 10 10 15 23 30 30 29 30 30 34 34 30 25 32 23 19 14 14 19 19 21 28 28 34 34 41 37 31 25 32 21 26 26 30 34 30 24 25 25 28 22 12 9 9 13 10 15 28 32 28 29 32 34 34 19 15 8 8 8 10 15 32 30 34 23 23 20 26 34 31 32 15 22 10 8 8 15 19 22 15 12 10 13 10 9 8 8 8 8 8 9 12 24 27 14 14 14 16 11 14 9 9 9 16 11 17 17 11 12 13 22 24 13 12 12 14 15 15 17 13 19 21 23 15 12 12 11 11 11 17 17 12 8 8 8 8 8 8 11 8 8 8	Open. Hide. 6 6 8 15 11 8 8 10 22 27 47 50 50 50 50 50 50 50 50 50 47 59 35 27 18 6 6 6 6 11 8 10 9 10 10 23 19 32 32 37 48 36 36 36 36 50 50 53 53 53 53 53 35 34 21 16 21 13 17 11 15 15 18 13 28 29 41 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 50 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 50 50 50 50 57 57 59 59 59 57 57 57 57 57 57 57 57 59 59 59 68 68 59 59 68 68 59 59 59 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 50 43 43 33 35 35 35 43 43 43 48 57 57 57 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 43 43 43 43 59 59 59 59 59 59 59 48 59 59 68 68 68 57 57 48 48 54 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 48 48 48 59 59 50 50 43 43 39 23 17 9 9 9 9 10 15 28 32 39 41 42 48 48 48 59 59 59 59 59 59 59 59 59 59 44 37 39 44 41 41 41 41 41 40 43 40 39 39 39 39 37 43 43 50 50 53 53 50 50 57 59 57 59 59 48 48 48 48 48 48 59 59 59 59 59 43 43 30 30 30 43 43 50 50 50 47 39 37 37 28 33 33 43 39 40 41 39 37 39 39 41 41 44 44 43 43 47 46 47 32 32 20 18 18 25 25 39 39 48 43 43 32 32 30 28 28 33 34 28 25 28 24 30 25 35 24 28 21 12 12 20 16 16 12 28 28 34 30 37 29 22 14 12 12 15 25 32 37 27 27 27 27 25 31 31 31 37 32 32 29 22 19 23 23 20 23 20 11 9 9 12 11 9 9 10 10 9 14 27 37 29 27 14 14 11 12 14 17 25 23 25 19 12 11 10 10 10 10 13 15 18 15 12 12 16 12 21 21 19 14 13 15 10 10 9 9 9 17 17 32 32 24 10 9 8 11 10 12 19 15 15 10 17 19 26 16 8 8 10 8 8 8 8 10 10 10 10 19 21 41 26 21 16 11 11 10 10 10 14 27 27 40 40 34 30 19 15 15 12 11 11 11 11 11 23 23 13 13 11 10 9 7 11 6 6 6 6 9 10 10 8 10 6 6 8 8 9 9 11 11 15 10 12 12 17 17 15 15 8 7 7 9 10 9 10 11 11 11 19 21 21 12 11 9 9 9 9 9 11 8 8 8 8 8 8 8 8 9 9 8 12 10 8 6 6 6 8 6 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no260_n06.b1 MSMg01no260_n06.b1 CHROMAT_FILE:
MSMg01no260_n06.b1 PHD_FILE: MSMg01no260_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:02 2005
         (653 letters)



>mm_chr18_32961490_32962542
          Length = 1053

 Score = 1193 bits (617), Expect = 0.0
 Identities = 641/649 (98%), Gaps = 1/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcactgctctgtccctgacccgggaagcagcttgtatttgatgaggattggttggg 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattcactgctctgtagctgacccgggaagcagcttgtatttgatgaggattggttggg 682

                                                                       
Query: 66  actgggaatgaatatcaccctccatcatcttcacactccagactcccaagccctgggatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgggaatgaatatcaccctccatcatcttcacactccagactcccaagccctgggatt 622

                                                                       
Query: 126 acaggtgtatagcacaatgccagctcactggatagacagtgctctcactgacgtgatttt 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 acaggtgtatagcacaatgccagctcactggatagacagtgctctcactgacatgatttt 562

                                                                       
Query: 186 atccttcttctccttctcttgtctcaactatcttttccctctccctctatggttatatga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccttcttctccttctcttgtctcaactatcttttccctctccctctatggttatatga 502

                                                                       
Query: 246 ttagtcaccctttatttactctgccttttgtttcctttcctgggattctagcattgtctc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagtcaccctttatttactctgccttttgtttcctttcctgggattctagcattgtctc 442

                                                                       
Query: 306 ctgccagaaagacaaggatgaaagtgagatgagttatggcaagttattacccaaactggt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgccagaaagacaaggatgaaagtgagatgagttatggcaagttattacccaaactggt 382

                                                                       
Query: 366 gatctactcacacccatgccatgtttatatacaacttattaattttaaaattaaatttct 425
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctactcaaacccatgccatgtttatatacaacttattaattttaaaattaaatttct 322

                                                                       
Query: 426 caacattgagtttgcactgtacaaagttcatgcaatatcaaaccaggttgcgtctcccag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacattgagtttgcactgtacaaagttcatgcaatatcaaaccaggttgcgtctcccag 262

                                                                       
Query: 486 gccagctcttgcttttgaatactggccttcgcttgattttt-cattcctatcttgtaaca 544
           |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct: 261 gccagctcttgcttttgaatactgaccttcgtttgattttttcattcctatcttgtaaca 202

                                                                       
Query: 545 ggcaaacacaccgcatgagcagcagattattaatgttgtagctattggagtgttagtcac 604
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcaaacacacagcatgagcagcagattattaatgttgtagctattggagtgttagtcac 142

                                                            
Query: 605 tcttacagcttggccatggtaaataggtctagttcatatgctttggctt 653
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tcttacagcttggccatggtaaataggtctagttcatatgctttggctt 93


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information