BAC Information

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BAC

Clone NameMSMg01-260P11
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260P11.T7 (MSMg01no260_p11.b1)MSMg01-260P11.TJ (MSMg01no260_p11.g1)
ACCAG403486AG403487
length741754
length of high quality
(start - end)		520 (49 - 568)208 (76 - 283)
definitionCHROMAT_FILE: MSMg01no260_p11.b1 PHD_FILE: MSMg01no260_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:14 2005CHROMAT_FILE: MSMg01no260_p11.g1 PHD_FILE: MSMg01no260_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTC
TGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAA
TGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTC
ACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTT
GTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATG
TTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT
CCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTAATACCCCCCCTGTGATTGCCGTAACTTGCAATCTAGTGG
GCTTATGTTTGATTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTTTA
TATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTT
TATTTTATTTTATTTTATTTTATTTAATTTTATTTTATTTTATTTTANNT
TNNTTTTTTNNTTNNNNNTTTTTTTNNNTTNNTNTTTTTTTTTTTNNNTT
NTTNNTTTTTATTTNTATTNNNTTTTTTATTTATTTATNTTTTTTANNTA
NNANAATTTTTTTAAATATATAATTTTTTTTAATTATATTT

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGACT
TCAGGCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAACAGT
TCAGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGACAT
GCAGATCCCTGCCCCCCACCCCACCCCTCCCTCAGCCCCACCCAAACATA
GGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGNGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTNTTTTTTNTTTTTTTTTNT
TTTTTTTTTTTTNTTTTTNTNCCTTCTTTNNNTTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTCCCCCCCCGCGGGGNCTTTTNTTTCNNTCTCTTTTT
TTTCCCCTCTTCTTCCCTTTTTTTTTTCTTTTTTTTCCTCTCTTTTTTCC
CCGTTTTTTCTCTCCTCCCTTCCTCTTCCCGTCTCTCTTCTTTCCTTCCT
TCCCCTGTTTTTTCCTGCTGCTTTGTTTTTGCTTTTCTTTTTGTCTGGTT
CTTTTTTTTCTTTCGTCGCTCCTTTTTTTCTCCTTTCCCTTTTCCTTCCT
CCTTTTTCTCTTCCCTTCCTCTTTTCCTTTTTCTTCCCTTTCCCTTCTCC
CCCTTTCTTTCTCTTCTCCTTTCTTTCCTCGCCNTAGTCGCCTGTCCTTT
GTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_p11.b1 MSMg01no260_p11.b1 CHROMAT_FILE:
MSMg01no260_p11.b1 PHD_FILE: MSMg01no260_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:14 2005
         (520 letters)



>mm_chr18_40467472_40468390
          Length = 919

 Score =  377 bits (195), Expect = e-109
 Identities = 237/251 (94%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgact 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctg 184
           | |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216

                      
Query: 245 acttcatgttt 255
           |||||||||||
Sbjct: 215 acttcatgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space:   463590
Effective search space used:   463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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