BAC Information

Click to search

BAC

Clone NameMSMg01-262H15
Chromosome18 (Build37)
Map Location 25,663,359 - 25,663,718
singlet/doubletsinglet
Overlap geneBrunol4
Upstream geneBC021395, Slc39a6, Epl2, Mocos, Fhod3, 5730494M16Rik, AW554918
Downstream geneLOC100041241, LOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262H15.T7 (MSMg01no262_h15.b1)MSMg01-262H15.TJ (MSMg01no262_h15.g1)
ACCAG404566AG404567
length782868
length of high quality
(start - end)
364 (41 - 404)108 (76 - 183)
definitionCHROMAT_FILE: MSMg01no262_h15.b1 PHD_FILE: MSMg01no262_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:08 2005CHROMAT_FILE: MSMg01no262_h15.g1 PHD_FILE: MSMg01no262_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTCATCTCCCGACCAGCCCCTCCCTCTCACTCCCTGTTTGGCTGTGAGC
TCCGCCCGCTTCCGCCCAGCTCCTCCCCTATCCCCGTTGCCCTCCCTCTC
TGGCCTCGCCCTTTTACCGGCGACTCCTCCCCCTCCCCCTCCCCCCTCTG
CTCGTCCCCTGGCCCCGGTAAGCATCTCCTAATTTTGTTCTAGAAGATAG
AAAACTCTTCGTGGGTATGCTCAACAAGCAACAATCTGAGGACGACGTGC
GCCGCCTCTTCGAGGCCTTCGGGAACATCGAGGAGTGCACTATCCTGCGC
GGGCCGGACGGCAACAGCAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGCCCCCCCTCCCCAAACCCAATGTTTCCCATCTTCCCTTTTTTCTT
TCCTTCCTTTCCTTCTTACCCCTCTTTTCCCTTTTTTATTCCTACTTCCA
TTCCCTTTCCCTCTCGATCTTCCTCCTTCCCTACCCTTATTCACCATTCC
CCTTTTTTTTACTTCTTCCCCCCCCTTCCCTTCGTTCTTTTTTCCCCCTT
TTTCCCTATCTTCCCTTCCTTTACACTCTTCCATAACTCCTTCCCCCTCT
TCCGCTCCCCTCCTAACTTTTCTCCCTTCTCCTACCCATATATAATTTTT
TCTCCCGTTCTCGCGCATCTTTTCCCTTTTCTCTCAAACCCTTCATATCC
TATATATCTTATTACCATCTATATACCCATAT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGTTTAGTTCTATTCCCCATTTT
TTGGTGGGTTGTTTGGGTTTTTAGTGATTAACTTCTTGAGTTCTTTATAT
ATTTTGGATATTAGCCCTCTATCAGATGTCGGGTTAGTGAAGATTCTTTC
CCCCAATCTGTAGGTTGCCGATTTGTCTTATTGTCTACGCCCTTCGCCTT
ACAGAAGCTTTCTTACTTCCCGATCCCCCATCCACCATTTTCTGACCTCA
TAGCGAGAGCCACAGATTTTTTTGTCTATAAAATAATACTTATCAGCACC
ATGTTTTTTCGGACCCTTCCTTACTCCTCCCTGACCTTTTTATCCCTTTG
TTACCTTGTTTGCCTGTTACCGAATAACCCCCCCCCCCCCNATTATTAAA
TCTAAAGCTATTTCGAATTCACAACTTTGTCACCTTCCTCTCCCTATTAC
TTTTCATCTGTCTCTCTATAACCGCCCTTTTATTTATATTCTTATCCCCG
CCCCCCCCAAATTATTATTTTATATATTTTATACGCGCGCTCCATTGTTG
CCATAATTCTAGTGTATTATATTTTTTATATTGCACTATCGCTCCCCGCT
CCCATATTCCAATATTTATACACATTCGCTGTTGGTGTTAATTATCAAAT
AAAACCTCGGCACCCGTCCGTGCGGTCGTTTTTATCTCCTCCTTCTCCTC
CCTCTCCTTCATACTGTTGTTCCTGTTTCTTTTTTGTATCTAACTTATAT
TATTTCTTTTTCTTCTGTGCTTCGACTCCCCCTCCAATTTTATTTTTATA
ACTCATTAATCCTGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_h15.b1 MSMg01no262_h15.b1 CHROMAT_FILE:
MSMg01no262_h15.b1 PHD_FILE: MSMg01no262_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:08 2005
         (364 letters)



>mm_chr18_25663036_25663799
          Length = 764

 Score =  658 bits (340), Expect = 0.0
 Identities = 355/360 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcatctcccgaccagcccctccctctcactccctgtttggctgtgagctccg 64
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattccttcacctctcgaccagcccctccctctcactccctgtttggctgtgagctccg 624

                                                                       
Query: 65  cccgcttccgcccagctcctcccctatccccgttgccctccctctctggcctcgcccttt 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cccgcttccgccaagctcctcccctatccccgttgccctccctctctggcctcgcccttt 564

                                                                       
Query: 125 taccggcgactcctccccctccccctcccccctctgctcgtcccctggccccggtaagca 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 563 taccggcgactcctccccctccccctcccccctctgctcttcccctggccccggtaagca 504

                                                                       
Query: 185 tctcctaattttgttctagaagatagaaaactcttcgtgggtatgctcaacaagcaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tctcctaattttgttctagaagatagaaaactcttcgtgggtatgctcaacaagcaacaa 444

                                                                       
Query: 245 tctgaggacgacgtgcgccgcctcttcgaggccttcgggaacatcgaggagtgcactatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctgaggacgacgtgcgccgcctcttcgaggccttcgggaacatcgaggagtgcactatc 384

                                                                       
Query: 305 ctgcgcgggccggacggcaacagcaagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 364
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 ctgcgcgggccggacggcaacagcaagggtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgt 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)