Query= MSMg01no262_k24.b1 MSMg01no262_k24.b1 CHROMAT_FILE:
MSMg01no262_k24.b1 PHD_FILE: MSMg01no262_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:24 2005
(568 letters)
>mm_chr18_49784872_49785832
Length = 961
Score = 948 bits (490), Expect = 0.0
Identities = 543/568 (95%), Gaps = 17/568 (2%)
Strand = Plus / Plus
Query: 6 gaattcttcccaaaa---tccctccaccaactaggaagcaagcaatcaaacacatgagct 62
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttcccaaaacagt---tccaccaactaggaagcaagcaatcaaacacatgagct 262
Query: 63 tctccttgtcatcctcattaaaccagcacagcctccacctctcctcttatccagtgatga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctccttgtcatcctcattaaaccagcacagcctccacctctcctcttatccagtgatga 322
Query: 123 tgcttaaagaccttccatcattggcttatatccccaaggatcttctttgtagccagcact 182
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 tgtttaaagaccttccatcattggcttatatccccaagaatcttctttgtagccagcact 382
Query: 183 tcactggggtgaaatggcaattagtgt--aaaaaaccttaagaactgaggtgaagagaaa 240
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 383 tcactggggtg-aatggcaattagtgtaaaaaaaaccttaagaactgaggtgaagagaaa 441
Query: 241 actatatgtagttagatgttacagagaagaacgcagcaccagaagtaagcctaaggtcca 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actatatgcagttagatgttacagagaagaacgcagcaccagaagtaagcctaaggtcca 501
Query: 301 ccattggcctttctacttactgtcttgattcattatgtcaaaaacagacattattattct 360
||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 502 ccactggcctttctacttactgtcttgattc---atgtcaaaaacggacattattattct 558
Query: 361 agcccttctctccttctttttgtctagcattcatttacaaagcatttttatgcctgtaag 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agcccttctctccttcttcttgtctagcattcatttacaaagcatttttatgcctgtaag 618
Query: 421 aattacccagtaagtatagcagatcagggtatctttacaacgtgagagactgacaaatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aattacccagtaagtatagcagatcagggtatctttacaacgtgagagactgacaaatca 678
Query: 481 aagggacagggcaaggtgagctgggtgaagaatcaagtcaagtcgctggctgactcaaca 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 679 aagggacagggcaaggtgagctgggtgaagaatcaagtc-----gctggctgactcaaca 733
Query: 541 gtaggacacaccgcaacaataaagataa 568
||||||| | ||||||||||||||||||
Sbjct: 734 gtaggactccccgcaacaataaagataa 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 961
Length adjustment: 10
Effective length of query: 558
Effective length of database: 951
Effective search space: 530658
Effective search space used: 530658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_k24.g1 MSMg01no262_k24.g1 CHROMAT_FILE:
MSMg01no262_k24.g1 PHD_FILE: MSMg01no262_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:24 2005
(554 letters)
>mm_chr18_49845017_49845974
Length = 958
Score = 948 bits (490), Expect = 0.0
Identities = 510/518 (98%), Gaps = 4/518 (0%)
Strand = Plus / Minus
Query: 41 gaagtccagccctattcttcccctgctcagtcattggctgttaagctctctttattgaca 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gaagtccagccctattcttcccctgctcagtcattggctgttaagctctctttattgaca 899
Query: 101 catcatggaacagttggggagctggtgtttatgaatgattgagacaggagattctttgaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 catcatggaacagttggggagctggtgtttatgaatgattgagacaggagattctttgaa 839
Query: 161 taaggattgtaaccagatataggggcacagaaatcagcatttgaataatttatgctgtgc 220
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 838 taaggattgtaaccagatataggggcccagaaatcagcatttgaataatttatgctgtgc 779
Query: 221 ccaataacattgtgattacaggttccgttctaagatgataaccaatcatagccctctgaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ccaataacattgtgattacaggttccgttctaagatgataaccaatcatagccctctgaa 719
Query: 281 atatgggaaat---aaaaaaaaaagaaacatctcttcactgttgacccatcacacagaag 337
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 718 atatgggaaataaaaaaaaaaaaagaatcatctcttcactgttgacccatcacacagaag 659
Query: 338 gaatcactgagttacggcctgtgagaaccatggacttgtcctgtgtgcaggactggcagt 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaatcactgagttacggcctgtgagaaccatggacttgtcctgtgtgcaggactggcagt 599
Query: 398 gtttttacatgcttgaaggtggaggtga-ggaccagtgacgtcagggacttcctatggca 456
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 598 gtttttacatgcttgaaggtggaggtgagggaccagtgaagtcagggacttcctatggca 539
Query: 457 tttgaatatttacttcgtgagcttaatgagctgctgtttcacctctctgtaagcatcctg 516
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 538 tttgaatatttacttcgtgagcttaatgagctgctgtttaacctctctgtaagcatcctg 479
Query: 517 tgccttaacaccgtttcctccaagatggaagctattca 554
||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgccttaacaccgtttcctccaagatggaagctattca 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 958
Length adjustment: 10
Effective length of query: 544
Effective length of database: 948
Effective search space: 515712
Effective search space used: 515712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
