BAC Information

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BAC

Clone NameMSMg01-263A12
Chromosome18 (Build37)
Map Location 65,897,299 - 65,897,578
singlet/doubletsinglet
Overlap gene5330437I02Rik
Upstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532
Downstream geneSec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263A12.T7 (MSMg01no263_a12.b1)MSMg01-263A12.TJ (MSMg01no263_a12.g1)
ACCAG404965AG404966
length760755
length of high quality
(start - end)
290 (72 - 361)286 (84 - 369)
definitionCHROMAT_FILE: MSMg01no263_a12.b1 PHD_FILE: MSMg01no263_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:50 2005CHROMAT_FILE: MSMg01no263_a12.g1 PHD_FILE: MSMg01no263_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAAAAATCTCTTCTTTTCAGTGGTACTGTAAAGAGCTTTCT
AAGCCAACATCAGTACCTTTGCCTCCGTCACAGCCCATGCTGGGTAGGTA
GCTCAGCAAGGCTGTGGGCCAAGCGTCACAGGTTCCTTCAAGCATCCCTC
CCACCTTCTGCATGTCCACTGAGGCAAGTGCGTGGTCTCCGTGGTGTTAT
CTTCTCTCTTGTGTCTCTCTGCCAGGTTGCAGCTCCTTCACATGTACTCT
GTGTCCTTGCTGGTTGGTTTCTTCTCTTTTGTTCCCTGGGGACCTGTCTG
GGAAGTGGCCCAGTTTTTCTGGGATAACTGCCGGGAGGTTTGGTGGACGA
ATCTGCTGTTGCTGAACAACCCCCTGACTGTCCAGAATGCCGTGAGTTCC
CAAGGGCTCTTTCGCAAGGGTGTGTGTCTAAACACAATGTGTCTCAGTCA
TATGGTCTGGTCGGTTTCCTAATGTCCAATCCTAAGTCGTATCTTCATGA
CTTTCGAAAATTATTGATATCTTTTGATGTAACTCTTTCTTGCATTCTTT
CCCATATTTTTTTAAATTTAACCTTTAATGTATATTCACTTAAGTTCTAA
TTCACCATATTTCCACACTTCTTATTTTTATACACGACTCTTACCCACAC
AAACTTATTAAGACTAATATTAAACTACCAATCCAACCATCACTAACGAC
CTCATATACT
NNNNCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGAGAGAGTTGGT
TTGTTTTTCTTTTTATGACGATTGAGTTATGAGCTTTTTGTTGCTAAGAG
CAGTGATTCTCCGGCTTCCTACTTTGCTATGATCCTTTAATACAGTTCCT
GATGTTGCGGTGACTCCCAACCGTAAAATTATTTTCGTCGCTGCTTCATA
CCTGTAATTTTGCTATTGTTATGAATCATAATGTAAATATCCAACATGCA
GGACATCTGTGTGACCCTCTGGGGGTCGCGATCCCCGTGTTGAGAACCAC
TGGTTAACGGCTTTCTATTTGTTACTACGCCTCCCCCCGAAGGTTCACGG
TAGTCTGTTTTCCGTGTATAACCCACCACATGAATCGATAATTTCCCATT
AGTTATAGAATCCGATTACAGGTTTATCTCATCCAATGTTACTAGGATAT
TCCGCTTAGTCCTTATTACTCTTCGGATTGTTCTTTGCTTCCCCCCACTT
CATTCTTATCCACCTTTTTTCATCCCTTTCGTCTTCTTCTTTTCTTTTTT
CTTTTCCCCCCTTTTTCTTCTCTTCCCCCCTTTTCCCCCTCCTTTTCTTT
TTCCCCTCCTTTCCCCCCTTTTTTTTCCTCCCCCTTTTCTTCCTTTTTCC
CCCCTCTCCCCTTTTCCTTTTCCCCATTCCCCCTCTTTCTTTATTCCCCA
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_a12.b1 MSMg01no263_a12.b1 CHROMAT_FILE:
MSMg01no263_a12.b1 PHD_FILE: MSMg01no263_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:50 2005
         (290 letters)



>mm_chr18_65897089_65897778
          Length = 690

 Score =  460 bits (238), Expect = e-134
 Identities = 272/288 (94%), Gaps = 8/288 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttcagtggtactgtaaagagctttctaagccaacatcagtacctttgcctccgtcacag 62
           |||||||||||||||||||||||||||||||||        ||||||||||| |||||||
Sbjct: 211 tttcagtggtactgtaaagagctttctaagcca--------acctttgcctctgtcacag 262

                                                                       
Query: 63  cccatgctgggtaggtagctcagcaaggctgtgggccaagcgtcacaggttccttcaagc 122
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 cccatgctgggtaggtagctcagcaaggctgtgggctaagcgtcacaggttccttcaagc 322

                                                                       
Query: 123 atccctcccaccttctgcatgtccactgaggcaagtgcgtggtctccgtggtgttatctt 182
           ||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 323 atccctcccacctcctgaatgtccactgaggcgagtgcgtggtcaccgtggtgttatctt 382

                                                                       
Query: 183 ctctcttgtgtctctctgccaggttgcagctccttcacatgtactctgtgtccttgctgg 242
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 383 ctctcttgtgtctctctgccaggttgcagctccttcatatgtactctgtgtgcttgctgg 442

                                                           
Query: 243 ttggtttcttctcttttgttccctggggacctgtctgggaagtggccc 290
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttggtttcttctcttttgttccctggggacctgtctgggaagtggccc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)